{"id":"W1974115977","doi":"10.1128/jvi.02616-08","title":"Coinfection of Ugandan Red Colobus ( <i>Procolobus</i> [ <i>Piliocolobus</i> ] <i>rufomitratus tephrosceles</i> ) with Novel, Divergent Delta-, Lenti-, and Spumaretroviruses","year":2009,"lang":"en","type":"article","venue":"Journal of Virology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":88,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"National Institutes of Health; Natural Sciences and Engineering Research Council of Canada; McGill University; Morris Animal Foundation","keywords":"Biology; Simian immunodeficiency virus; Simian; Phylogenetic tree; Virology; Phylogenetics; Primate; Retrovirus; Zoology; Virus; Genetics; Gene; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001885014,0.0004415892,0.0002390517,0.0008870258,0.0004884187,0.0004442209,0.0001531189,0.0004015564,0.001355055],"category_scores_gemma":[0.001083272,0.0003196321,0.000106127,0.0003495121,0.0006085925,0.0003073094,0.0003817729,0.0002597386,0.0001800117],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002316798,"about_ca_system_score_gemma":0.0001084083,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004645868,"about_ca_topic_score_gemma":0.006893117,"domain_scores_codex":[0.9997048,0.00007387975,0.00001812367,0.0000715822,0.00003590767,0.00009578191],"domain_scores_gemma":[0.9995273,0.0001011022,0.0002052178,0.00004425864,0.00003785024,0.00008428847],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005256557,0.00006819046,0.9829511,0.00003982046,0.00003920528,0.0008616656,0.0008076967,0.0000264701,0.01058044,0.00004046128,0.00008843838,0.003970818],"study_design_scores_gemma":[0.000008650319,0.0003615276,0.9941207,0.00002801442,0.00003148869,0.003042246,0.0008445661,0.0001185189,0.0009387362,0.00002283875,0.000476456,0.000006322495],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995049,0.0001543904,0.00001193295,0.000007015791,0.000002312517,0.000002817535,0.00002120352,0.00000139125,0.000294032],"genre_scores_gemma":[0.9997332,0.00007772366,0.0000463738,0.00001836283,0.000003236102,0.000003182375,0.00003277578,6.271288e-7,0.00008463482],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004645868,"threshold_uncertainty_score":0.009237647,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01004248665008602,"score_gpt":0.2366317677821173,"score_spread":0.2265892811320312,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}