{"id":"W1974115977","doi":"10.1128/jvi.02616-08","title":"Coinfection of Ugandan Red Colobus ( <i>Procolobus</i> [ <i>Piliocolobus</i> ] <i>rufomitratus tephrosceles</i> ) with Novel, Divergent Delta-, Lenti-, and Spumaretroviruses","year":2009,"lang":"en","type":"article","venue":"Journal of Virology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":88,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"National Institutes of Health; Natural Sciences and Engineering Research Council of Canada; McGill University; Morris Animal Foundation","keywords":"Biology; Simian immunodeficiency virus; Simian; Phylogenetic tree; Virology; Phylogenetics; Primate; Retrovirus; Zoology; Virus; Genetics; Gene; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004466755,0.0002862618,0.0007673852,0.0002880491,0.0002012278,0.00001938376,0.0002300945,0.0003228779,0.0001829725],"category_scores_gemma":[0.000107492,0.000206191,0.0001602779,0.0002498184,0.0005152762,0.0001955124,0.00006124193,0.0005476685,0.00001847554],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001035361,"about_ca_system_score_gemma":0.0002345861,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005492688,"about_ca_topic_score_gemma":0.0001565783,"domain_scores_codex":[0.9980786,0.0002318201,0.0007103603,0.0002903705,0.0001476859,0.0005411775],"domain_scores_gemma":[0.9984089,0.000187994,0.0007027152,0.0002255448,0.0003574489,0.0001173889],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.006820495,0.001809238,0.03809858,0.000033652,0.0007937585,0.000155328,0.0001837339,0.00008305065,0.9344382,0.0001704235,0.01372868,0.003684851],"study_design_scores_gemma":[0.03328481,0.0578196,0.2762404,0.0001826602,0.0009960575,0.007379987,0.0002960855,0.00000940005,0.397516,0.0002902071,0.2252946,0.0006901239],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9943118,0.002805245,0.0004842155,0.0008002839,0.0003152739,0.0005050522,0.0001749813,0.00002291696,0.0005802147],"genre_scores_gemma":[0.9977531,0.001045204,0.0003768083,0.0005242392,0.00005622078,0.00001327458,0.00003580883,0.00001629824,0.0001790715],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5369222,"threshold_uncertainty_score":0.8408226,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01004248665008602,"score_gpt":0.2366317677821173,"score_spread":0.2265892811320312,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}