{"id":"W1974309182","doi":"10.1371/journal.pone.0003496","title":"PhoP: A Missing Piece in the Intricate Puzzle of Mycobacterium tuberculosis Virulence","year":2008,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":231,"is_retracted":false,"has_abstract":true,"ca_institutions":"Montreal General Hospital","funders":"Cancer Center Amsterdam; Universidad de Zaragoza; Ministerio de Economía y Competitividad","keywords":"Virulence; Mycobacterium tuberculosis; Mutant; Biology; Isocitrate lyase; Tuberculosis; Microbiology; Tuberculosis vaccines; Transcriptome; Virology; Gene; Genetics; Enzyme; Biochemistry; Gene expression; Medicine; Glyoxylate cycle","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003153593,0.0003793605,0.0004206554,0.0002035537,0.0002547651,0.0009233649,0.0003163778,0.0009050291,0.001221702],"category_scores_gemma":[0.0004681453,0.0002092411,0.0001649029,0.0001961643,0.0007514862,0.001944432,0.0006117684,0.001410051,0.0005278463],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002461526,"about_ca_system_score_gemma":0.0002869668,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001655033,"about_ca_topic_score_gemma":0.0001688074,"domain_scores_codex":[0.9998713,0.00001526088,0.000008098743,0.00003451226,0.00003657468,0.00003428656],"domain_scores_gemma":[0.9998271,0.00003577724,0.0000290187,0.00003153803,0.00002044834,0.00005620986],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008292343,0.00005478076,0.008530729,0.0004448706,0.00003754618,0.0009359188,0.0002685431,0.001008941,0.9183123,0.006965368,0.002355396,0.0602564],"study_design_scores_gemma":[0.0001619332,0.001945531,0.1403823,0.0006765756,0.000268949,0.01248122,0.004027279,0.01673658,0.5842037,0.08877242,0.1501388,0.00020476],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9384995,0.03026359,0.01124543,0.01587142,0.0003432302,0.0000150891,0.0006171242,0.0003285435,0.00281611],"genre_scores_gemma":[0.9827153,0.01055875,0.003255271,0.0009478791,0.0003368269,0.000009615031,0.0004206872,0.00004682702,0.001708808],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001221702,"threshold_uncertainty_score":0.004086971,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09110869502063473,"score_gpt":0.2991883625383909,"score_spread":0.2080796675177561,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}