{"id":"W1974774624","doi":"10.1128/mbio.00334-10","title":"Evidence of a Dominant Lineage of Vibrio cholerae-Specific Lytic Bacteriophages Shed by Cholera Patients over a 10-Year Period in Dhaka, Bangladesh","year":2011,"lang":"en","type":"article","venue":"mBio","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":153,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; University of Guelph; Public Health Agency of Canada","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Howard Hughes Medical Institute","keywords":"Vibrio cholerae; Cholera; Lytic cycle; Myoviridae; Bacteriophage; Biology; Virology; Microbiology; Pandemic; Lineage (genetic); Genome; Virus; Gene; Bacteria; Genetics; Medicine; Infectious disease (medical specialty); Coronavirus disease 2019 (COVID-19); Disease","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000246222,0.0003263857,0.0003528557,0.001086868,0.0009120014,0.0008742948,0.000312275,0.0005672076,0.001774367],"category_scores_gemma":[0.001002013,0.0003381199,0.0002789018,0.001307701,0.0004680895,0.0003676293,0.0005465934,0.0004892043,0.0003550628],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007981939,"about_ca_system_score_gemma":0.0005400198,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02381349,"about_ca_topic_score_gemma":0.0268903,"domain_scores_codex":[0.9995338,0.00006119555,0.00005598652,0.0001416372,0.000070812,0.0001366823],"domain_scores_gemma":[0.9990344,0.000114985,0.0003451334,0.00003867897,0.0002218704,0.000244979],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001350293,0.00001713706,0.9920856,0.00003720988,0.00002254015,0.0003229733,0.0006693656,0.00002465916,0.005002091,0.0000196567,0.0001607096,0.001502943],"study_design_scores_gemma":[0.000004774306,0.00006964162,0.9970264,0.00001137608,0.00001270951,0.0005306725,0.001726941,0.00003778003,0.0002451708,0.000009065218,0.000318441,0.000007104251],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985861,0.0002480336,0.00006258103,0.00005195121,0.000004524095,0.000009585588,0.0006157777,0.000002558369,0.0004189387],"genre_scores_gemma":[0.9993708,0.0001084551,0.00004554108,0.00002455443,0.000003582506,0.000006145102,0.0003327219,0.000001187206,0.0001071416],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02381349,"threshold_uncertainty_score":0.04734975,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02635098954280581,"score_gpt":0.2594395622942043,"score_spread":0.2330885727513985,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}