{"id":"W1974774624","doi":"10.1128/mbio.00334-10","title":"Evidence of a Dominant Lineage of Vibrio cholerae-Specific Lytic Bacteriophages Shed by Cholera Patients over a 10-Year Period in Dhaka, Bangladesh","year":2011,"lang":"en","type":"article","venue":"mBio","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":153,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; University of Guelph; Public Health Agency of Canada","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Howard Hughes Medical Institute","keywords":"Vibrio cholerae; Cholera; Lytic cycle; Myoviridae; Bacteriophage; Biology; Virology; Microbiology; Pandemic; Lineage (genetic); Genome; Virus; Gene; Bacteria; Genetics; Medicine; Infectious disease (medical specialty); Coronavirus disease 2019 (COVID-19); Disease","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002363205,0.0002203725,0.000382507,0.00009446221,0.00003551958,0.00001907097,0.0003504021,0.0001471326,0.0005527347],"category_scores_gemma":[0.0001990324,0.0001999626,0.0001247554,0.0001709591,0.0002459142,0.00001979172,0.0003267971,0.0001126242,0.00001770695],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003122607,"about_ca_system_score_gemma":0.00005954663,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000956269,"about_ca_topic_score_gemma":0.00002830878,"domain_scores_codex":[0.9983795,0.00009135169,0.0004717204,0.0004411822,0.0002531617,0.0003630439],"domain_scores_gemma":[0.9990122,0.00001854806,0.0001889967,0.000516245,0.0001807048,0.00008327945],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008104399,0.0003380874,0.03461409,0.000114063,0.00005041237,0.000005071958,0.0009984066,2.413438e-7,0.9609793,0.00000227518,0.001568952,0.0005185992],"study_design_scores_gemma":[0.001630952,0.000792227,0.3492569,0.0002060837,0.000009164473,9.989808e-7,0.00007360896,0.000005490966,0.6452513,0.000001320455,0.002589701,0.0001822409],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972479,0.001798472,0.00001795478,0.00002937266,0.00007751797,0.000342356,0.0001000313,0.000005084119,0.000381306],"genre_scores_gemma":[0.9979547,0.0009059329,0.0002621443,0.00002872411,0.00005042035,0.00003837187,0.00006325782,0.00002731084,0.0006691996],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.315728,"threshold_uncertainty_score":0.8154237,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02635098954280581,"score_gpt":0.2594395622942043,"score_spread":0.2330885727513985,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}