{"id":"W1974807302","doi":"10.1016/j.ympev.2013.03.016","title":"Reconstructing the phylogeny of aphids (Hemiptera: Aphididae) using DNA of the obligate symbiont Buchnera aphidicola","year":2013,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":128,"is_retracted":false,"has_abstract":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Buchnera; Biology; Aphididae; Phylogenetics; Aphid; Phylogenetic tree; Evolutionary biology; Hemiptera; Cladogenesis; Acyrthosiphon pisum; Clade; Zoology; Genetics; Botany; Gene; Genome; PEST analysis","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001618692,0.0001321573,0.0001712773,0.00001391493,0.0002488518,0.00004317332,0.0002385993,0.00009672069,0.00002924134],"category_scores_gemma":[0.00002584051,0.00004516798,0.0001252346,0.0002783431,0.0003097039,0.00004058216,0.0001186865,0.00007980481,9.146498e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001425577,"about_ca_system_score_gemma":0.00001150794,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001220616,"about_ca_topic_score_gemma":0.0000435199,"domain_scores_codex":[0.998985,0.0001141115,0.0003370925,0.0001905415,0.0001761866,0.0001970867],"domain_scores_gemma":[0.9993973,0.00004125353,0.0002638221,0.0001087505,0.0001514816,0.00003733943],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000003880519,0.00002027871,0.04120452,0.00001028757,0.00001758617,1.692238e-7,0.00004468549,0.00002324277,0.954182,0.0004314736,0.000005169571,0.004056705],"study_design_scores_gemma":[0.00007190434,0.00009094954,0.5409664,0.00004498798,0.00002861315,0.00001369589,0.0001562899,0.0006888653,0.455752,0.002023739,0.0000523295,0.0001102751],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986151,0.0006301496,0.00001718728,0.0002131964,0.0001404217,0.0002854874,0.00001578248,0.000006194548,0.00007645146],"genre_scores_gemma":[0.9995334,0.00004621563,0.0002418573,0.00007820375,0.00008357237,0.00000918165,0.000002358062,0.00000151422,0.00000369886],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4997618,"threshold_uncertainty_score":0.1913992,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00810005772421196,"score_gpt":0.1738271429170664,"score_spread":0.1657270851928545,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}