{"id":"W1974985820","doi":"10.1128/aem.71.3.1616-1625.2005","title":"Genomic Comparisons of <i>Salmonella enterica</i> Serovar Dublin, Agona, and Typhimurium Strains Recently Isolated from Milk Filters and Bovine Samples from Ireland, Using a <i>Salmonella</i> Microarray","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":60,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Enterprise Ireland","keywords":"Prophage; Serotype; Salmonella; Biology; Microbiology; Salmonella enterica; Pathogenicity island; Genomic island; Virulence; Strain (injury); genomic DNA; Virology; Gene; Escherichia coli; Bacteria; Genetics; Bacteriophage","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001191385,0.0003699296,0.000654216,0.00002319766,0.0001696754,0.00002329186,0.000182746,0.0003142952,0.0002374456],"category_scores_gemma":[0.000003957387,0.0002103889,0.00007007187,0.00006554016,0.0007103349,0.00005293902,0.0002791705,0.0002034476,0.00001504147],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003588648,"about_ca_system_score_gemma":0.000004549077,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001175178,"about_ca_topic_score_gemma":0.000258889,"domain_scores_codex":[0.9981042,0.0001239924,0.0005217449,0.0007611578,0.00004359125,0.0004453421],"domain_scores_gemma":[0.9991876,0.0002758464,0.0002433305,0.0001175607,0.000005043973,0.0001705718],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002017766,0.0001104663,0.08645503,0.000004563128,0.00008997462,0.000002038602,0.0001930043,0.00000846184,0.9078385,0.000005734818,0.000289195,0.004801226],"study_design_scores_gemma":[0.003366369,0.0008555744,0.8225119,0.00005791517,0.0003437403,0.0002469536,0.003295206,0.0007177464,0.1189536,0.0003393872,0.04783322,0.001478436],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9929496,0.004073662,0.00003558987,0.0003847794,0.00007605069,0.0002509971,0.00216123,0.00002772799,0.00004036048],"genre_scores_gemma":[0.9929081,0.002526115,0.001751156,0.0009590113,0.000163014,0.000006594963,0.001661569,0.000006922663,0.00001750779],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7888849,"threshold_uncertainty_score":0.8579411,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01655776323513104,"score_gpt":0.1925318076241037,"score_spread":0.1759740443889727,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}