{"id":"W1974985820","doi":"10.1128/aem.71.3.1616-1625.2005","title":"Genomic Comparisons of <i>Salmonella enterica</i> Serovar Dublin, Agona, and Typhimurium Strains Recently Isolated from Milk Filters and Bovine Samples from Ireland, Using a <i>Salmonella</i> Microarray","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":60,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Enterprise Ireland","keywords":"Prophage; Serotype; Salmonella; Biology; Microbiology; Salmonella enterica; Pathogenicity island; Genomic island; Virulence; Strain (injury); genomic DNA; Virology; Gene; Escherichia coli; Bacteria; Genetics; Bacteriophage","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001379029,0.0002378148,0.0002826063,0.0006559711,0.0001693011,0.0003623751,0.0001651969,0.0002477704,0.0005390471],"category_scores_gemma":[0.0004681861,0.000194695,0.0003236746,0.0006002008,0.000217189,0.0001037276,0.0002273315,0.0003310624,0.0001997261],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004410504,"about_ca_system_score_gemma":0.0002252558,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005581018,"about_ca_topic_score_gemma":0.009521834,"domain_scores_codex":[0.9997292,0.00002085024,0.00001886938,0.0001216881,0.00005171856,0.00005768852],"domain_scores_gemma":[0.9995608,0.00008844896,0.0001398571,0.00002435385,0.00009191634,0.00009469156],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005715103,0.00005265469,0.0402599,0.00007179028,0.00004069902,0.0000614213,0.0002117327,0.0001299706,0.9552647,0.00002616329,0.0001117485,0.003197736],"study_design_scores_gemma":[0.0000135726,0.000529259,0.9537082,0.00001008419,0.00006010946,0.0003647415,0.0003665402,0.0005869915,0.04274805,0.00001755516,0.001584988,0.000009908103],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976266,0.00008510217,0.0002901604,0.00001898806,0.000003910091,0.000009351294,0.001541576,0.00001089663,0.0004133456],"genre_scores_gemma":[0.9869261,0.0001207413,0.001967082,0.00007955897,0.000007521548,0.00003628911,0.009762459,0.00001582312,0.001084528],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005581018,"threshold_uncertainty_score":0.01109707,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01655776323513104,"score_gpt":0.1925318076241037,"score_spread":0.1759740443889727,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}