{"id":"W1975025051","doi":"10.1128/jb.185.7.2131-2142.2003","title":"Genomic Diversification among Archival Strains of <i>Salmonella enterica</i> Serovar Typhimurium LT7","year":2003,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Medical Research Council; National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; National Institutes of Health; Medical Research Council Canada; Fondation pour la Recherche Médicale; University of Missouri","keywords":"Biology; Salmonella enterica; Serotype; Salmonella; Genomic island; Microbiology; Genetics; Genome; Restriction enzyme; genomic DNA; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002025127,0.0001059628,0.0002426036,0.00006112931,0.00005211596,0.00001166986,0.0002133122,0.00005754815,0.001455873],"category_scores_gemma":[0.00003030834,0.00009307192,0.0001404001,0.00007948276,0.0002308882,0.0001926664,0.00006521631,0.0001959077,0.00007181109],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009131959,"about_ca_system_score_gemma":0.00001991465,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006444455,"about_ca_topic_score_gemma":0.00001443271,"domain_scores_codex":[0.9990317,0.000133211,0.0004537099,0.0001299219,0.00007292311,0.0001784867],"domain_scores_gemma":[0.9991567,0.0000339947,0.0005503785,0.0001483151,0.00002437638,0.00008630857],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004329267,0.00009497565,0.02668577,0.000004296749,0.00003314818,0.000009731127,0.0002235017,0.00007845762,0.97156,0.00003189844,0.0004555584,0.0007793531],"study_design_scores_gemma":[0.0003240666,0.0002816735,0.969563,0.00001283553,0.00003404068,0.0003006858,0.0001090391,0.0000107156,0.01908738,0.00008756424,0.01009508,0.00009391597],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9951555,0.00001277729,0.0005610758,0.0001073159,0.000536603,0.00006484199,0.00001388459,0.000004217906,0.003543815],"genre_scores_gemma":[0.9978285,0.00007306074,0.001698604,0.00007868379,0.00005452767,7.398639e-7,0.000003783673,0.000009783398,0.0002522637],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9524726,"threshold_uncertainty_score":0.9994569,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01166248245962326,"score_gpt":0.2225450256043315,"score_spread":0.2108825431447083,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}