{"id":"W1975025051","doi":"10.1128/jb.185.7.2131-2142.2003","title":"Genomic Diversification among Archival Strains of <i>Salmonella enterica</i> Serovar Typhimurium LT7","year":2003,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Medical Research Council; National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; National Institutes of Health; Medical Research Council Canada; Fondation pour la Recherche Médicale; University of Missouri","keywords":"Biology; Salmonella enterica; Serotype; Salmonella; Genomic island; Microbiology; Genetics; Genome; Restriction enzyme; genomic DNA; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003774985,0.0003069268,0.0003544843,0.001483631,0.0003841637,0.0005648265,0.0003447682,0.0004018471,0.000781696],"category_scores_gemma":[0.0008079485,0.0001960983,0.0005934708,0.0009933993,0.0003783305,0.0001517794,0.0005790361,0.000343827,0.0004462296],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002703039,"about_ca_system_score_gemma":0.0001612702,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002143506,"about_ca_topic_score_gemma":0.003575854,"domain_scores_codex":[0.9994803,0.00004588469,0.00004514541,0.0001631823,0.0001621385,0.000103303],"domain_scores_gemma":[0.999006,0.0001437984,0.000193645,0.000157258,0.0003639421,0.0001353613],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006008276,0.00007181263,0.1533207,0.0001434435,0.0001570189,0.0004940514,0.001193305,0.00012985,0.8307818,0.0001294663,0.0004560383,0.0125218],"study_design_scores_gemma":[0.00001272163,0.0005132004,0.8637394,0.00003212627,0.0002206386,0.002475998,0.001475977,0.0004092039,0.1242082,0.00006887972,0.006815196,0.00002843582],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968264,0.0002314229,0.0008400998,0.00002061913,0.00001202016,0.00002167786,0.00140055,0.00002820257,0.0006190214],"genre_scores_gemma":[0.9822212,0.000392124,0.003332223,0.0001084411,0.00002325196,0.00005956563,0.01268779,0.0001022126,0.001073172],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002143506,"threshold_uncertainty_score":0.00426203,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01166248245962326,"score_gpt":0.2225450256043315,"score_spread":0.2108825431447083,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}