{"id":"W1975173211","doi":"10.1038/ismej.2008.4","title":"Evolutionary loss of the rdar morphotype in <i>Salmonella</i> as a result of high mutation rates during laboratory passage","year":2008,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"National Institute of General Medical Sciences; Alberta Heritage Foundation for Medical Research; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; National Institutes of Health; Fondation pour la Recherche Médicale","keywords":"Biology; rpoS; Genetics; Locus (genetics); Phenotype; Population; Mutation rate; Gene; Sigma factor; Mutation; Genotype; Salmonella; Escherichia coli; Gene expression; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002055847,0.00007631355,0.00009884239,0.00003245081,0.0001195106,0.000003415042,0.0002050691,0.00007311258,0.00001448608],"category_scores_gemma":[0.00008769499,0.00004990081,0.00006364631,0.0001589002,0.0001907546,0.000004100892,0.00005014957,0.0001590181,0.000002314217],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002109279,"about_ca_system_score_gemma":0.0001915385,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004701145,"about_ca_topic_score_gemma":0.00002765631,"domain_scores_codex":[0.9991717,0.0001556954,0.0002835467,0.00009033408,0.0001801855,0.0001185396],"domain_scores_gemma":[0.9993674,0.00001463866,0.0002219148,0.0002080569,0.0001591118,0.00002892144],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002773311,0.0001089513,0.02687573,0.00001871468,0.00005462944,0.00002239528,0.0004432633,0.01706201,0.9533765,0.0001257536,0.001597982,0.00003668697],"study_design_scores_gemma":[0.001438652,0.0001589705,0.6912122,0.0000540104,0.00002349786,0.000872521,0.0003248825,0.0005209084,0.3035639,0.00116995,0.0005199087,0.0001406559],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980744,0.0009258726,0.00008619814,0.0004900129,0.0001187301,0.00007004153,0.00002189196,0.000001882919,0.0002110242],"genre_scores_gemma":[0.9987022,0.0005047697,0.0001564639,0.00008839637,0.00009041405,0.000001597254,0.000006796682,0.000008950518,0.0004403892],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6643364,"threshold_uncertainty_score":0.2034896,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004439820067706935,"score_gpt":0.216256457664754,"score_spread":0.2118166375970471,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}