{"id":"W1975351420","doi":"10.1155/2015/198560","title":"Phylogenomic and Molecular Demarcation of the Core Members of the Polyphyletic<i>Pasteurellaceae</i>Genera<i>Actinobacillus</i>,<i>Haemophilus</i>, and<i>Pasteurella</i>","year":2015,"lang":"en","type":"article","venue":"International Journal of Genomics","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"","keywords":"Biology; Polyphyly; Actinobacillus; Haemophilus; Phylogenetic tree; Pasteurella; Sensu; Evolutionary biology; Actinobacillus pleuropneumoniae; Clade; Zoology; Microbiology; Genetics; Genus; Gene; Serotype; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004512758,0.0001245887,0.0002258716,0.000120256,0.00007081488,0.00001898406,0.0004712782,0.0001037796,0.00002845222],"category_scores_gemma":[0.0001512923,0.00008105332,0.0001640921,0.0001195181,0.0004316082,0.00005402563,0.0002977711,0.0002632776,0.000002956057],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008789399,"about_ca_system_score_gemma":0.0002836557,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001057663,"about_ca_topic_score_gemma":0.00002030705,"domain_scores_codex":[0.9989113,0.0001774428,0.0004985588,0.0001272682,0.0001456436,0.0001398106],"domain_scores_gemma":[0.9984224,0.0000894489,0.0006061213,0.0002073884,0.00062282,0.00005181745],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000252232,0.000090897,0.01086669,0.00001552088,0.0003372904,0.000002734132,0.0003891161,0.000687115,0.9836973,0.001076415,0.001533347,0.001051345],"study_design_scores_gemma":[0.004196713,0.0003247632,0.008723792,0.0001579486,0.0002879337,0.002241117,0.0007944804,0.00009665268,0.935129,0.002341993,0.0454429,0.0002627045],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9914104,0.005490321,0.0001081512,0.001272696,0.001132923,0.0001549032,0.000072232,0.000002312337,0.0003560239],"genre_scores_gemma":[0.9988663,0.0005416979,0.00009701731,0.0002428001,0.00007282594,0.000001110329,0.000004225139,0.00001312094,0.0001609061],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04856829,"threshold_uncertainty_score":0.3305258,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01893805628691815,"score_gpt":0.2551027877175229,"score_spread":0.2361647314306047,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}