{"id":"W1975566317","doi":"10.1016/j.tim.2014.04.010","title":"The gut microbiome, probiotics, bile acids axis, and human health","year":2014,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Pediatric Hepatobiliary Diseases and Treatments","field":"Medicine","cited_by":63,"is_retracted":false,"has_abstract":false,"ca_institutions":"McGill University","funders":"","keywords":"Biology; Bile acid; Microbiome; Gut microbiome; Probiotic; G protein-coupled bile acid receptor; Gut flora; Receptor; Microbiology; Farnesoid X receptor; Biochemistry; Bioinformatics; Bacteria; Nuclear receptor","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002952188,0.0001917767,0.0003725808,0.0002077262,0.0002039308,0.0000155485,0.0001101541,0.0001211285,0.00008540567],"category_scores_gemma":[0.00002469813,0.0001237289,0.00007940208,0.0002513355,0.000261843,0.00002270469,0.00008378988,0.0001702849,0.00003887446],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001036121,"about_ca_system_score_gemma":0.00006317363,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001997607,"about_ca_topic_score_gemma":0.000485885,"domain_scores_codex":[0.9986054,0.0001574253,0.0003580706,0.0003679917,0.00003039683,0.000480744],"domain_scores_gemma":[0.9992889,0.00007903931,0.0001002027,0.0003620652,0.00002414008,0.0001456967],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003224357,0.001331259,0.7509792,0.000193114,0.0002520901,0.00005133435,0.000358693,0.000001263579,0.06267601,0.001309516,0.05351412,0.129011],"study_design_scores_gemma":[0.007903754,0.003187882,0.5618503,0.00009651997,0.000156216,0.0005218454,0.00009563513,0.00002843136,0.0008970808,0.0003737938,0.4244331,0.000455443],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.992486,0.003040617,0.0000058318,0.002889219,0.0001825073,0.0002678578,0.0000930582,0.0000526029,0.0009822842],"genre_scores_gemma":[0.9961408,0.0004706083,0.0002876739,0.0007255651,0.0001119088,0.00001711326,0.0004460576,0.00001955826,0.00178067],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.370919,"threshold_uncertainty_score":0.5045519,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01309776659671153,"score_gpt":0.3057227451898678,"score_spread":0.2926249785931562,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}