{"id":"W1975748930","doi":"10.1186/1471-2164-12-373","title":"Spontaneous and evolutionary changes in the antibiotic resistance of Burkholderia cenocepacia observed by global gene expression analysis","year":2011,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":70,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"Cystic Fibrosis Trust","keywords":"Burkholderia cenocepacia; Biology; Microbiology; Burkholderia cepacia complex; Antibiotic resistance; Efflux; Virulence; Antibiotics; Genetics; Amikacin; Gene; Burkholderia; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002428477,0.0001214266,0.0003056769,0.00008470651,0.00004849629,0.00000927555,0.0001685047,0.00006390219,0.00003759213],"category_scores_gemma":[0.0001538616,0.00009071143,0.00005997028,0.0004602862,0.0001481853,0.00003679581,0.00006984793,0.00008181336,0.000002124772],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001283966,"about_ca_system_score_gemma":0.00007834983,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002057662,"about_ca_topic_score_gemma":0.00280825,"domain_scores_codex":[0.9989048,0.0001012542,0.0002274463,0.0002670441,0.0002549741,0.0002445218],"domain_scores_gemma":[0.9992784,0.0001006527,0.0001000671,0.0003785201,0.00006172622,0.00008065087],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001995826,0.0002762582,0.2318067,0.0002984242,0.0001268246,0.0002393054,0.001121826,0.00003185823,0.7628416,0.00007369094,0.0009217656,0.0002658714],"study_design_scores_gemma":[0.001051124,0.0002675344,0.9230869,0.0001088513,0.0002798428,0.000163051,0.00112947,0.0003641969,0.07205456,0.0004587979,0.0008577252,0.000177912],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9925642,0.006123629,0.0003395255,0.00009017966,0.00002568068,0.0003274632,0.0001620898,0.00001132288,0.0003559194],"genre_scores_gemma":[0.9687449,0.000485259,0.03051743,0.00003579776,0.00003106062,0.000005400912,0.00005466779,0.000008977097,0.00011645],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6912802,"threshold_uncertainty_score":0.3699105,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04323757113236556,"score_gpt":0.2732877125498978,"score_spread":0.2300501414175322,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}