{"id":"W1975935823","doi":"10.1016/j.tube.2008.02.005","title":"Spontaneous transposition of IS1096 or ISMsm3 leads to glycopeptidolipid overproduction and affects surface properties in Mycobacterium smegmatis","year":2008,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":46,"is_retracted":false,"has_abstract":false,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"Indo-French Centre for the Promotion of Advanced Research; Institut National de la Santé et de la Recherche Médicale","keywords":"Mycobacterium smegmatis; Operon; Gene; Locus (genetics); Biology; Genetics; Transposition (logic); Phenotype; Insertion sequence; Overproduction; Plasmid; Wild type; Gene cluster; Mycobacterium tuberculosis; Genome; Tuberculosis; Transposable element; Escherichia coli; Mutant","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002063518,0.0002231048,0.0005088121,0.0002260198,0.00007336235,0.00001591702,0.00007188883,0.0001153696,0.0003521321],"category_scores_gemma":[0.00020252,0.000173226,0.00007632839,0.0004725277,0.0001129928,0.0002171801,0.0000369234,0.0001770122,0.00004335278],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001343301,"about_ca_system_score_gemma":0.0001074483,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008453755,"about_ca_topic_score_gemma":0.0003390884,"domain_scores_codex":[0.9983698,0.0001144563,0.0003229768,0.0004057595,0.0003959525,0.0003910213],"domain_scores_gemma":[0.9991586,0.00009298378,0.00005057621,0.0003179091,0.000117268,0.0002626324],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.005399505,0.0005393703,0.1474686,0.001359512,0.00006583322,0.0008787067,0.003453272,0.00005402051,0.8362082,0.000007692596,0.001581402,0.002983845],"study_design_scores_gemma":[0.001491775,0.002093864,0.7174522,0.0008358675,0.00008868918,0.003183455,0.0001381275,0.000079053,0.2739756,0.000003384578,0.0003927078,0.0002652211],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955668,0.0004051794,0.000007525671,0.002443319,0.0001140569,0.0009708559,0.00004105018,0.00005709078,0.0003941453],"genre_scores_gemma":[0.9963664,0.00180992,0.0006983398,0.0003484991,0.0001401512,0.0000615717,0.00003047703,0.00003365539,0.0005109963],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5699836,"threshold_uncertainty_score":0.706395,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02419644532631382,"score_gpt":0.2604135516208314,"score_spread":0.2362171062945176,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}