{"id":"W1975935823","doi":"10.1016/j.tube.2008.02.005","title":"Spontaneous transposition of IS1096 or ISMsm3 leads to glycopeptidolipid overproduction and affects surface properties in Mycobacterium smegmatis","year":2008,"lang":"en","type":"article","venue":"Tuberculosis","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":46,"is_retracted":false,"has_abstract":false,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"Indo-French Centre for the Promotion of Advanced Research; Institut National de la Santé et de la Recherche Médicale","keywords":"Mycobacterium smegmatis; Operon; Gene; Locus (genetics); Biology; Genetics; Transposition (logic); Phenotype; Insertion sequence; Overproduction; Plasmid; Wild type; Gene cluster; Mycobacterium tuberculosis; Genome; Tuberculosis; Transposable element; Escherichia coli; Mutant","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002437301,0.0007100739,0.0005468558,0.0003890969,0.0002197205,0.0005041134,0.0005417017,0.000702796,0.001359636],"category_scores_gemma":[0.0003601151,0.0003017914,0.0005837309,0.0005025333,0.0005232241,0.0001720842,0.0005043616,0.001372654,0.0008502266],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005495622,"about_ca_system_score_gemma":0.0002834561,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001494081,"about_ca_topic_score_gemma":0.001009488,"domain_scores_codex":[0.9995178,0.00009349318,0.00005900636,0.00006606043,0.0001617148,0.0001019436],"domain_scores_gemma":[0.9995207,0.00013706,0.0001338715,0.00008600149,0.00002665242,0.00009563394],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008455579,0.00003096684,0.0001134438,0.00001267721,0.000006587318,0.00009448924,0.00001624301,0.00003792034,0.9991645,0.00005100716,0.00003087966,0.0003567596],"study_design_scores_gemma":[0.0000266551,0.0002024873,0.005321261,0.000006441781,0.00002820209,0.0004893475,0.00009318694,0.001072651,0.9915576,0.00005432426,0.001136038,0.00001172405],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962325,0.000219709,0.001964987,0.0001297331,0.00007897194,0.00002656332,0.0005065138,0.0001208009,0.0007202611],"genre_scores_gemma":[0.995481,0.0001152493,0.001195343,0.00006684107,0.00001467382,0.00002337529,0.0008404418,0.00009688567,0.002166053],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001494081,"threshold_uncertainty_score":0.00454843,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02419644532631382,"score_gpt":0.2604135516208314,"score_spread":0.2362171062945176,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}