{"id":"W1976149286","doi":"10.1186/1471-2164-9-325","title":"Altered gene expression changes in Arabidopsis leaf tissues and protoplasts in response to Plum pox virus infection","year":2008,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":94,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University; University of Toronto; University of British Columbia; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Chinese Academy of Sciences","keywords":"Arabidopsis; Biology; Gene; Gene expression; Gene expression profiling; Arabidopsis thaliana; Microarray analysis techniques; Molecular biology; Cell biology; Genetics; Mutant","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000757277,0.000378832,0.0002995315,0.0003340473,0.0001794922,0.0003296649,0.000140708,0.0002881816,0.0009803454],"category_scores_gemma":[0.00009683419,0.0001695001,0.0002416861,0.0003025093,0.0001901798,0.0001688855,0.0001637797,0.0004222774,0.0003120602],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003425917,"about_ca_system_score_gemma":0.0001274645,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006000017,"about_ca_topic_score_gemma":0.0007378071,"domain_scores_codex":[0.9998865,0.00000844693,0.000005922529,0.00004631082,0.00002741013,0.00002531872],"domain_scores_gemma":[0.9998817,0.00002992453,0.00002935968,0.000008295362,0.0000173198,0.00003341852],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003050354,0.000004001502,0.000248364,0.0000140277,0.000002383469,0.00002197764,0.00000959583,0.00000714833,0.9994701,0.000004825408,0.000007072175,0.000180136],"study_design_scores_gemma":[0.00002198873,0.0003710875,0.2024465,0.000007000448,0.00005999635,0.0007110821,0.0001357435,0.0006262377,0.7941477,0.00005018149,0.001408949,0.00001354597],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965456,0.0007263251,0.0008508242,0.0000260573,0.00001134934,0.00001896626,0.00128499,0.00006822031,0.000467584],"genre_scores_gemma":[0.98676,0.0008041163,0.002131063,0.0001186859,0.00001648143,0.00009503587,0.006909396,0.00004401345,0.003121209],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009803454,"threshold_uncertainty_score":0.003279567,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06307479974897362,"score_gpt":0.2765290507570636,"score_spread":0.21345425100809,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}