{"id":"W1976197991","doi":"10.1016/j.micinf.2014.09.008","title":"Transcriptome analysis of Escherichia coli O157:H7 grown in vitro in the sterile-filtrated cecal content of human gut microbiota associated rats reveals an adaptive expression of metabolic and virulence genes","year":2014,"lang":"en","type":"article","venue":"Microbes and Infection","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":false,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Virulence; Transcriptome; Microbiology; Escherichia coli; Gene; Shiga toxin; Pathogen; Gene expression; Enterocyte; Gut flora; Enterobacteriaceae; Genetics; Small intestine; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005622465,0.0001278958,0.0004042358,0.0001612328,0.00004993711,0.00001136191,0.00008196888,0.0001143453,0.000002785242],"category_scores_gemma":[0.000057032,0.00009798579,0.0000717227,0.0004230448,0.0001840055,0.00001514105,0.00005137814,0.00008973949,2.992617e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007564659,"about_ca_system_score_gemma":0.00001416607,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001517025,"about_ca_topic_score_gemma":0.00114341,"domain_scores_codex":[0.9986974,0.0004890772,0.0003504445,0.0002310302,0.00008193957,0.0001500794],"domain_scores_gemma":[0.9994669,0.00002931528,0.0001873319,0.0001496583,0.0001408808,0.00002594393],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002050254,0.000208539,0.05218552,0.00003779502,0.0001521561,1.651135e-7,0.0004133344,0.00002077704,0.9465359,0.00001807144,0.00000558645,0.0002171611],"study_design_scores_gemma":[0.0003619414,0.0003364808,0.4258033,0.00002791881,0.00007228841,3.111678e-7,0.0001484604,0.0001245033,0.5730366,0.000004400045,0.00002579533,0.0000580526],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980076,0.001567104,0.00009609723,0.0000115041,0.00001549445,0.0002256653,0.00005134867,0.000002205092,0.00002300799],"genre_scores_gemma":[0.9986111,0.001173486,0.00008837783,0.00002574986,0.00001098313,0.00001790419,0.00005401874,0.000006571463,0.00001180331],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3736177,"threshold_uncertainty_score":0.3995744,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02540169988596033,"score_gpt":0.2741356617879938,"score_spread":0.2487339619020335,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}