{"id":"W1976197991","doi":"10.1016/j.micinf.2014.09.008","title":"Transcriptome analysis of Escherichia coli O157:H7 grown in vitro in the sterile-filtrated cecal content of human gut microbiota associated rats reveals an adaptive expression of metabolic and virulence genes","year":2014,"lang":"en","type":"article","venue":"Microbes and Infection","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":false,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Virulence; Transcriptome; Microbiology; Escherichia coli; Gene; Shiga toxin; Pathogen; Gene expression; Enterocyte; Gut flora; Enterobacteriaceae; Genetics; Small intestine; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007625045,0.0002104478,0.0003151931,0.0002185261,0.0001588827,0.0002707227,0.00007704223,0.0001490707,0.0006795896],"category_scores_gemma":[0.00008717245,0.0001222256,0.0002368766,0.000245801,0.0001802468,0.0001151083,0.0001371374,0.00030446,0.0002192003],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001092995,"about_ca_system_score_gemma":0.0002007219,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008442907,"about_ca_topic_score_gemma":0.00104435,"domain_scores_codex":[0.9999278,0.000008897709,0.000003806053,0.00002069916,0.00001695016,0.00002194707],"domain_scores_gemma":[0.9999452,0.0000104534,0.000009750943,0.000005623202,0.00001230098,0.00001664623],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000158557,0.000007666346,0.0007738333,0.00001136288,0.000003741991,0.00002033092,0.00001425923,0.00001678944,0.9986229,0.00001281194,0.000009192547,0.0003486279],"study_design_scores_gemma":[0.00001235928,0.0005722833,0.2198661,0.00001123582,0.00008614834,0.0003772679,0.0004054848,0.001221855,0.7758579,0.0001111193,0.001464391,0.0000138302],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964787,0.0003860474,0.00132872,0.00003779732,0.0000146959,0.000008306621,0.001244415,0.00001475136,0.0004865187],"genre_scores_gemma":[0.9923179,0.0005296989,0.001650725,0.00006849124,0.00001423864,0.00002700433,0.002911838,0.00002098661,0.002459074],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008442907,"threshold_uncertainty_score":0.00227344,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02540169988596033,"score_gpt":0.2741356617879938,"score_spread":0.2487339619020335,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}