{"id":"W1976210008","doi":"10.1093/molbev/msp011","title":"Comparative Analysis of Structural Diversity and Sequence Evolution in Plant Mitochondrial Genes Transferred to the Nucleus","year":2009,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":73,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; University of British Columbia","keywords":"Biology; Genetics; Nonsynonymous substitution; Gene; Nuclear gene; Intron; Mitochondrial DNA; Molecular evolution; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000186076,0.0001791157,0.0002709869,0.001004516,0.0002878299,0.0002901246,0.0001982825,0.0002861611,0.0005223635],"category_scores_gemma":[0.0006627552,0.0001227763,0.0003036666,0.0008278362,0.0002721557,0.0002428621,0.0002606068,0.0003339843,0.0002544114],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002968487,"about_ca_system_score_gemma":0.000177169,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004656616,"about_ca_topic_score_gemma":0.0007179398,"domain_scores_codex":[0.9998224,0.00002616061,0.00001407218,0.00005688406,0.00005227053,0.00002818096],"domain_scores_gemma":[0.9994482,0.0001507226,0.0001618205,0.00004241602,0.00008750725,0.0001093998],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003074249,0.00003753795,0.02807781,0.00009137259,0.00007833951,0.000365624,0.0003980763,0.0004389131,0.9634226,0.0002030459,0.00002348895,0.006555719],"study_design_scores_gemma":[0.00003816036,0.0008051848,0.888134,0.00005360453,0.0002868676,0.00316172,0.0005909973,0.004561889,0.09726605,0.000423063,0.004632655,0.00004582005],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991854,0.0001732788,0.0002778404,0.000005312934,0.000001819109,0.000003623559,0.00007832402,0.000005525984,0.0002689069],"genre_scores_gemma":[0.9979655,0.0001974129,0.0008203423,0.00002014457,0.000006486923,0.00001160819,0.0007041059,0.00001086082,0.0002634785],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001004516,"threshold_uncertainty_score":0.002153754,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01224008118034406,"score_gpt":0.2647929141214093,"score_spread":0.2525528329410652,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}