{"id":"W1976317980","doi":"10.1038/nbt959","title":"The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough","year":2004,"lang":"en","type":"article","venue":"Nature Biotechnology","topic":"Mine drainage and remediation techniques","field":"Environmental Science","cited_by":651,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Biological and Environmental Research; U.S. Department of Energy","keywords":"Desulfovibrio vulgaris; Desulfovibrio; Bacteria; Hydrogenase; Biology; Sulfate-reducing bacteria; Periplasmic space; Bioremediation; Biochemistry; Formate dehydrogenase; Anaerobic respiration; Organism; Microbiology; Gene; Chemistry; Formate; Escherichia coli; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002732497,0.0001474962,0.0001429284,0.00004449559,0.0002750533,0.00001725332,0.0009593347,0.0007755514,0.00007316951],"category_scores_gemma":[0.0001883865,0.0000822743,0.00007973091,0.0005798069,0.0008450404,0.00009076761,0.0004318359,0.0008195745,0.00003556864],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002089119,"about_ca_system_score_gemma":0.00003562295,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003759953,"about_ca_topic_score_gemma":0.0002429348,"domain_scores_codex":[0.9988725,0.000041937,0.0002474673,0.0003072495,0.0002266993,0.0003041515],"domain_scores_gemma":[0.9990031,0.00003940056,0.000194113,0.0007163347,0.00001750592,0.00002954712],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000006434999,0.00002062765,0.000137254,0.000003900829,0.000008752439,0.000003947429,0.0001181825,0.0001414878,0.9905429,0.004681393,0.0004398825,0.003895274],"study_design_scores_gemma":[0.000168462,0.00006953967,0.004233197,0.00001402681,0.00001084223,0.00003293723,0.00004985943,0.00001290128,0.9015529,0.004205153,0.08951505,0.0001351521],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9735522,0.0008191257,0.0007736636,0.02217079,0.0005879198,0.0005108971,0.00002556422,0.0002587998,0.001301064],"genre_scores_gemma":[0.9966712,0.0003370703,0.002299945,0.0003349922,0.00004245984,0.00001401737,0.000006802584,0.0000134631,0.0002800325],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08907516,"threshold_uncertainty_score":0.5981763,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005508534568460993,"score_gpt":0.2211738349584169,"score_spread":0.215665300389956,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}