{"id":"W1976340594","doi":"10.1097/qai.0b013e3182a4b991","title":"Baseline Clinical HIV Genotypes Are a Valid Measure of Transmitted Drug Resistance Within the Treatment-Naive Population","year":2013,"lang":"en","type":"article","venue":"JAIDS Journal of Acquired Immune Deficiency Syndromes","topic":"HIV/AIDS drug development and treatment","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa; Alberta Health Services; University of Alberta; Western University; Public Health Agency of Canada","funders":"Biotechnology and Biological Sciences Research Council; University of Alberta; Public Health Agency of Canada; Health Research Board","keywords":"Genotyping; Interquartile range; Genotype; Medicine; Drug resistance; Internal medicine; Population; Human immunodeficiency virus (HIV); Immunology; Biology; Genetics; Environmental health","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001030665,0.0002479521,0.0002591918,0.0004943396,0.000228717,0.0005698047,0.0002771106,0.0003366914,0.002343119],"category_scores_gemma":[0.00630257,0.0001395159,0.0001229987,0.000467753,0.0002975942,0.0004479171,0.0002025322,0.0003912917,0.0002908899],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004145959,"about_ca_system_score_gemma":0.0004173297,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008113473,"about_ca_topic_score_gemma":0.009803691,"domain_scores_codex":[0.998914,0.0003181628,0.00009359456,0.0002182224,0.000344162,0.000111847],"domain_scores_gemma":[0.995988,0.001145616,0.001819463,0.0002445287,0.0004872764,0.0003151877],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002286572,0.00003799402,0.9962534,0.00001177038,0.0000240566,0.00001466571,0.00003669816,0.00006165593,0.0005159051,0.00001464497,0.00008438794,0.002716158],"study_design_scores_gemma":[0.000005464258,0.0001865301,0.9991876,0.000004205424,0.000007762241,0.0001205571,0.000052067,0.0001368152,0.0001671678,0.00001432315,0.0001158015,0.000001715034],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976751,0.000303617,0.0002885935,0.00003884441,0.000005719767,0.00002244699,0.0007281778,0.000008281778,0.0009292238],"genre_scores_gemma":[0.9990513,0.00005280901,0.0002621032,0.00002438614,0.000005286663,0.000008329138,0.0004498544,0.000001766641,0.0001442112],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008113473,"threshold_uncertainty_score":0.01613247,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02611347447381825,"score_gpt":0.2870154544967086,"score_spread":0.2609019800228903,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}