{"id":"W1976652566","doi":"10.1371/journal.pone.0119701","title":"Transcriptome Profiling of Khat (Catha edulis) and Ephedra sinica Reveals Gene Candidates Potentially Involved in Amphetamine-Type Alkaloid Biosynthesis","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Berberine and alkaloids research","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; Western University; University of Calgary","funders":"Alberta Innovates Bio Solutions; Israel Science Foundation; Alberta Innovates; Génome Québec; McGill University; United States - Israel Binational Agricultural Research and Development Fund","keywords":"Biology; Illumina dye sequencing; Cathinone; Gene; Computational biology; Genetics; Database; Amphetamine; DNA sequencing","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006680087,0.0001721755,0.0002873136,0.0003191592,0.0002088819,0.0002149209,0.00009002705,0.0001709634,0.000576712],"category_scores_gemma":[0.0000964328,0.0001076212,0.0003258888,0.0004294244,0.0001463985,0.0001646533,0.0002173296,0.0002348909,0.000155164],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001761388,"about_ca_system_score_gemma":0.0001545246,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002423195,"about_ca_topic_score_gemma":0.003462936,"domain_scores_codex":[0.9999486,0.000004332263,0.000004786573,0.00002335197,0.000009174638,0.000009717816],"domain_scores_gemma":[0.9999158,0.00002705782,0.00002001333,0.000007960137,0.00001341364,0.00001562692],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001554832,0.00001265559,0.003647507,0.00006137591,0.000009391632,0.00006446818,0.0001065893,0.00009428738,0.993661,0.00002955007,0.00001854685,0.002139112],"study_design_scores_gemma":[0.00002369078,0.0004559026,0.8211655,0.00002004128,0.0001022099,0.0006542632,0.0006409832,0.003805596,0.1695105,0.0001153544,0.003486312,0.00001968064],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969459,0.0002979033,0.0006622032,0.00002642661,0.000002502908,0.00001326304,0.001539728,0.00003464938,0.0004774581],"genre_scores_gemma":[0.9855333,0.0004445674,0.00289446,0.00008997152,0.000004672067,0.00005013035,0.00785133,0.00002538789,0.003106133],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002423195,"threshold_uncertainty_score":0.004818141,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09500223124218064,"score_gpt":0.2911761941032989,"score_spread":0.1961739628611183,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}