{"id":"W1976903449","doi":"10.1111/nph.12956","title":"Whole plastome sequencing reveals deep plastid divergence and cytonuclear discordance between closely related balsam poplars, <i><scp>P</scp>opulus balsamifera</i> and <i><scp>P</scp>. trichocarpa</i> (<scp>S</scp>alicaceae)","year":2014,"lang":"en","type":"article","venue":"New Phytologist","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":129,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; National Evidence-based Healthcare Collaborating Agency; Genome British Columbia; Genome Canada","keywords":"Biology; Populus trichocarpa; Lineage (genetic); Evolutionary biology; Phylogenetic tree; Chloroplast DNA; Nuclear gene; Phylogenetics; Genome; Plastid; Genetics; Gene; Chloroplast","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001132429,0.0001969661,0.0001312414,0.0003883525,0.0002232814,0.0003264516,0.0001620662,0.0002366531,0.0004157642],"category_scores_gemma":[0.0002959771,0.0001077427,0.0001647183,0.0003402251,0.0002272595,0.0001271167,0.0002792937,0.0003037644,0.000179975],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001038443,"about_ca_system_score_gemma":0.00007208745,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004821265,"about_ca_topic_score_gemma":0.001344821,"domain_scores_codex":[0.9999025,0.000007215497,0.000006468189,0.0000571729,0.00001563569,0.00001102709],"domain_scores_gemma":[0.9997113,0.00008775546,0.00009125063,0.0000395045,0.00002168044,0.00004835449],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008949043,0.00001218614,0.0220949,0.00003801523,0.00003382841,0.0001673798,0.0004516567,0.0001416782,0.9720259,0.00007766601,0.0000246645,0.004842619],"study_design_scores_gemma":[0.00001196685,0.000142426,0.8921928,0.00001236644,0.00009220487,0.002238396,0.0004170545,0.00163439,0.09994035,0.00035843,0.00294256,0.00001704423],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983157,0.00009696596,0.001025458,0.000008201553,0.000001525209,0.00000230982,0.0002622092,0.00002989525,0.0002578293],"genre_scores_gemma":[0.9966797,0.00006683647,0.001779404,0.00001906086,0.000002215229,0.000005821838,0.001231265,0.00001779835,0.000197977],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0004821265,"threshold_uncertainty_score":0.001390874,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01319462367341183,"score_gpt":0.227344527743444,"score_spread":0.2141499040700322,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}