{"id":"W1976903449","doi":"10.1111/nph.12956","title":"Whole plastome sequencing reveals deep plastid divergence and cytonuclear discordance between closely related balsam poplars, <i><scp>P</scp>opulus balsamifera</i> and <i><scp>P</scp>. trichocarpa</i> (<scp>S</scp>alicaceae)","year":2014,"lang":"en","type":"article","venue":"New Phytologist","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":129,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; National Evidence-based Healthcare Collaborating Agency; Genome British Columbia; Genome Canada","keywords":"Biology; Populus trichocarpa; Lineage (genetic); Evolutionary biology; Phylogenetic tree; Chloroplast DNA; Nuclear gene; Phylogenetics; Genome; Plastid; Genetics; Gene; Chloroplast","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000661518,0.000947876,0.001190115,0.000157081,0.0006754788,0.0002075875,0.0007566858,0.0006994866,0.000002366754],"category_scores_gemma":[0.002265774,0.0009231177,0.0002468733,0.0004737079,0.0007421513,0.00002529847,0.0009611874,0.000587965,0.00004984946],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007613467,"about_ca_system_score_gemma":0.0001665903,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000225651,"about_ca_topic_score_gemma":0.000204437,"domain_scores_codex":[0.9950312,0.0003473614,0.001008926,0.001796976,0.0004489513,0.001366543],"domain_scores_gemma":[0.9963486,0.001205077,0.0006629446,0.000931979,0.0001851505,0.000666224],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002629892,0.0000969789,0.3156479,0.0002019277,0.0005612351,0.00003988491,0.0009826436,0.0004278086,0.6325469,0.000364494,0.04621572,0.002888166],"study_design_scores_gemma":[0.004264571,0.002010979,0.4695139,0.0002012588,0.000520185,0.0002739804,0.002187175,0.000327647,0.09107136,0.002679863,0.4263703,0.0005787897],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9799142,0.01435524,0.001003918,0.0001785677,0.0006172014,0.0006264708,0.0003475695,0.00007623932,0.00288053],"genre_scores_gemma":[0.9887283,0.005076518,0.001961214,0.0006997123,0.000759594,0.00005032902,0.0001716259,0.0001336332,0.002419017],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5414755,"threshold_uncertainty_score":0.9993219,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01319462367341183,"score_gpt":0.227344527743444,"score_spread":0.2141499040700322,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}