{"id":"W1977109589","doi":"10.1101/pdb.prot080325","title":"LysoTracker Staining to Aid in Monitoring Autophagy in <i>Drosophila</i>","year":2014,"lang":"en","type":"article","venue":"Cold Spring Harbor Protocols","topic":"Autophagy in Disease and Therapy","field":"Medicine","cited_by":63,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; BC Cancer Agency","funders":"Canadian Institutes of Health Research","keywords":"Autophagy; Cell biology; Staining; Biology; Flow cytometry; Cell; Molecular biology; Genetics; Apoptosis","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006375789,0.0002415545,0.0004568394,0.0003080438,0.00005402684,0.00005068611,0.0002127041,0.0001262996,0.00004087658],"category_scores_gemma":[0.000213187,0.0002493792,0.00008313466,0.0004874734,0.0000294642,0.0001421491,0.00008385278,0.0003661087,0.0001018673],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002334157,"about_ca_system_score_gemma":0.0001319758,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004803213,"about_ca_topic_score_gemma":0.000004843217,"domain_scores_codex":[0.9980752,0.00007979628,0.0004799053,0.0004686074,0.0003310474,0.000565429],"domain_scores_gemma":[0.9989417,0.00007592321,0.00008126566,0.0005629328,0.00005547851,0.000282732],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001205282,0.0009116305,0.6373895,0.0005956324,0.00005064869,0.0005485562,0.0006235363,0.0005433616,0.3416292,0.0126016,0.00006034359,0.003840642],"study_design_scores_gemma":[0.005312029,0.0004288041,0.7104867,0.001990521,0.00001139642,0.000001305674,0.00002054991,0.0005881212,0.2583345,0.0001700194,0.02230439,0.0003516494],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9524881,0.00007588496,0.0002029937,0.0003073466,0.0001023239,0.0457915,0.000001563779,0.0001676744,0.0008625687],"genre_scores_gemma":[0.9156731,0.000003323368,0.00174225,0.0006009345,0.0003922471,0.0814316,2.948414e-7,0.00005903955,0.00009717552],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08329473,"threshold_uncertainty_score":0.9999958,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02410930233292441,"score_gpt":0.3215034700865806,"score_spread":0.2973941677536562,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}