{"id":"W1977112124","doi":"10.1021/pr050094h","title":"Identification and Quantification of Differentially Expressed Proteins in E-Cadherin Deficient SCC9 Cells and SCC9 Transfectants Expressing E-Cadherin by Dimethyl Isotope Labeling, LC−MALDI MS and MS/MS","year":2005,"lang":"en","type":"article","venue":"Journal of Proteome Research","topic":"Mass Spectrometry Techniques and Applications","field":"Chemistry","cited_by":40,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"National Cancer Institute","keywords":"Cadherin; Chemistry; Identification (biology); Isotope; Chromatography; Molecular biology; Biochemistry; Biology; Cell; Physics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002258235,0.000216322,0.0004212198,0.000453266,0.0002072095,0.0002524783,0.000357091,0.0002129683,0.0002956284],"category_scores_gemma":[0.000165369,0.0001975653,0.00006196433,0.0005028803,0.00026778,0.000340377,0.0001200881,0.0008228476,0.000001793015],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001235913,"about_ca_system_score_gemma":0.00009024223,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001531976,"about_ca_topic_score_gemma":0.00002899808,"domain_scores_codex":[0.997075,0.0002010776,0.001003755,0.0004548405,0.0008376426,0.000427647],"domain_scores_gemma":[0.9984416,0.0001569098,0.0004678421,0.0003798928,0.0003558938,0.0001978247],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001367998,0.0004184913,0.001137448,0.000529914,0.0000224067,0.000002186856,0.0004292405,0.000007722005,0.9900882,0.0002318597,0.00007699339,0.006918748],"study_design_scores_gemma":[0.0009158714,0.0001723431,0.002304938,0.0004741207,0.00001828259,0.00001730344,0.0001606108,0.001007775,0.9927793,0.0006570413,0.00130761,0.0001848511],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9890104,0.001847853,0.007170435,0.0006381879,0.00001270968,0.000929267,0.00005027834,0.00002184327,0.0003190604],"genre_scores_gemma":[0.9894583,0.002000345,0.007876051,0.000003253084,0.00007382501,0.0001974864,0.00000663038,0.00003676954,0.0003473829],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006733897,"threshold_uncertainty_score":0.8056479,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03954299814287279,"score_gpt":0.3342709047819709,"score_spread":0.2947279066390981,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}