{"id":"W1977286905","doi":"10.1038/srep04432","title":"Novel Multiplex MethyLight Protocol for Detection of DNA Methylation in Patient Tissues and Bodily Fluids","year":2014,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":true,"ca_institutions":"Princess Margaret Cancer Centre; University Health Network; Lunenfeld-Tanenbaum Research Institute; University of Toronto; Mount Sinai Hospital","funders":"Prostate Cancer Canada","keywords":"Multiplex; DNA methylation; Methylation; Computational biology; DNA; Biomarker; Multiplex polymerase chain reaction; Biology; Molecular biology; Gene; Bioinformatics; Genetics; Polymerase chain reaction; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002246954,0.001347,0.0007252888,0.001875904,0.0005798377,0.0006214793,0.000828291,0.001327917,0.003230689],"category_scores_gemma":[0.002016966,0.0008167587,0.0005016059,0.0008357928,0.0006600397,0.0005754736,0.001041426,0.001909753,0.001463456],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004473359,"about_ca_system_score_gemma":0.0008342683,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003413303,"about_ca_topic_score_gemma":0.001025647,"domain_scores_codex":[0.9979258,0.0005565725,0.0001545474,0.0006462153,0.0005760514,0.0001409104],"domain_scores_gemma":[0.9991688,0.0002625541,0.0001632456,0.0001355909,0.0001781236,0.0000917256],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002874939,0.00007960911,0.001500586,0.0001682877,0.0000677618,0.0001052126,0.0001530268,0.0004155532,0.9685729,0.000633517,0.00112266,0.02689344],"study_design_scores_gemma":[0.00005519524,0.0007327473,0.004595864,0.00004408782,0.0001025251,0.001002059,0.00005260883,0.008242017,0.9645531,0.0006662127,0.01986362,0.00008989892],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.09527225,0.002673155,0.8908707,0.000459911,0.0004004703,0.002054941,0.002169133,0.00318592,0.002913588],"genre_scores_gemma":[0.1770652,0.002955904,0.7961523,0.0007171187,0.0001751231,0.00862936,0.003995259,0.0002124756,0.01009716],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.003230689,"threshold_uncertainty_score":0.0118832,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01760887077074629,"score_gpt":0.2936131884910362,"score_spread":0.2760043177202899,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}