{"id":"W1977403508","doi":"10.1080/07060660009500488","title":"Diversity in the coding regions for the coat protein, VPg, protease, and putative RNA-dependent RNA polymerase among tomato ringspot nepovirus isolates","year":2000,"lang":"en","type":"article","venue":"Canadian Journal of Plant Pathology","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Nepovirus; Genetics; RNA polymerase; Nucleic acid sequence; RNA; Coding region; Polymerase; Phylogenetic tree; Peptide sequence; RNA-dependent RNA polymerase; Multiple sequence alignment; Molecular biology; Virology; Gene; Sequence alignment","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0007149046,0.0001136492,0.0001905242,0.00004526325,0.00134796,0.00006212299,0.0003848805,0.00006302114,0.00004160549],"category_scores_gemma":[0.0002066473,0.00003781477,0.0000577276,0.0001388418,0.0002842977,0.000124144,0.0000557598,0.0002945793,0.000001878278],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004484172,"about_ca_system_score_gemma":0.00006264159,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.01236067,"about_ca_topic_score_gemma":0.1108982,"domain_scores_codex":[0.9989035,0.000231185,0.0002042035,0.0001412162,0.000132703,0.0003872003],"domain_scores_gemma":[0.998947,0.0006254662,0.0001288531,0.00003969757,0.00005694359,0.0002020393],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00296599,0.0003846609,0.1661243,0.0001334322,0.0006992433,0.03025191,0.0563561,0.0002674449,0.6202131,0.003517982,0.03173232,0.08735356],"study_design_scores_gemma":[0.002158677,0.002407288,0.9332697,0.0004025412,0.0001642305,0.005936,0.01745263,0.0005040157,0.01454505,0.004982802,0.01733747,0.0008395397],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.992824,0.0008709285,0.000006624647,0.004390121,0.0000371516,0.0006314495,0.001151955,0.000003778889,0.00008404536],"genre_scores_gemma":[0.9991939,0.0002194339,0.00001172905,0.0003394432,0.00008688048,0.00002926213,0.00001046609,8.516287e-7,0.0001080531],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7671455,"threshold_uncertainty_score":0.9999521,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04071593218257958,"score_gpt":0.235229222998303,"score_spread":0.1945132908157234,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}