{"id":"W1978075951","doi":"10.1371/journal.ppat.1004285","title":"Cryptococcus gattii VGIII Isolates Causing Infections in HIV/AIDS Patients in Southern California: Identification of the Local Environmental Source as Arboreal","year":2014,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":92,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of General Medical Sciences; Kaiser Permanente; Nova Southeastern University; National Institute of Allergy and Infectious Diseases; Johns Hopkins University; Centers for Disease Control and Prevention; North Carolina State University; National Institutes of Health","keywords":"Cryptococcus gattii; Outbreak; Biology; Multilocus sequence typing; Virulence; Isolation (microbiology); Cryptococcosis; Virology; Microbiology; Genotype; Genetics","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001166322,0.0002542415,0.0001563618,0.0005701073,0.0006694449,0.0004335383,0.0001527019,0.0002184105,0.0005645052],"category_scores_gemma":[0.0002885528,0.0001661392,0.0001208498,0.000609379,0.0002224113,0.000119278,0.0002110202,0.0002775383,0.00007738025],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003161999,"about_ca_system_score_gemma":0.000397827,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.04117232,"about_ca_topic_score_gemma":0.06544759,"domain_scores_codex":[0.9998885,0.000008714459,0.00001613752,0.00003482644,0.00002812772,0.00002369479],"domain_scores_gemma":[0.9997246,0.00003623753,0.0001018025,0.00001395007,0.00004613388,0.00007730504],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002535117,0.00004457713,0.9709625,0.0000911985,0.00003134147,0.001946669,0.001004496,0.0001281261,0.01678839,0.00001891603,0.0002434698,0.008486954],"study_design_scores_gemma":[0.00001212372,0.0001109317,0.9911212,0.00003155854,0.00004672981,0.00438368,0.001320018,0.000184703,0.002087797,0.00001529737,0.0006779577,0.000007963004],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993277,0.0001550608,0.00004523008,0.00001315042,0.000001782462,0.000008045469,0.0001387085,0.000003745925,0.0003066054],"genre_scores_gemma":[0.9993711,0.0001440107,0.0001783725,0.00001597187,0.000003381992,0.000002828605,0.0001920061,0.000001554766,0.00009082678],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04117232,"threshold_uncertainty_score":0.08186537,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007001030033955019,"score_gpt":0.2117138000714538,"score_spread":0.2047127700374988,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}