{"id":"W1978257350","doi":"10.1128/ec.00292-13","title":"Modeling the Transcriptional Regulatory Network That Controls the Early Hypoxic Response in Candida albicans","year":2014,"lang":"en","type":"article","venue":"Eukaryotic Cell","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":68,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Concordia University; Université Laval; National Research Council Canada; Centre hospitalier de l'Université Laval","funders":"Canadian Institutes of Health Research","keywords":"Biology; Candida albicans; Regulation of gene expression; Cell biology; Transcriptional regulation; Computational biology; Transcription factor; Microbiology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001421127,0.0004947159,0.0003119888,0.0003386103,0.0002651772,0.0003974784,0.0005304984,0.0004250128,0.000955711],"category_scores_gemma":[0.0003946407,0.0002376301,0.0004425031,0.0003442101,0.0002974408,0.000299549,0.0002207023,0.0003272316,0.0001360363],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008532171,"about_ca_system_score_gemma":0.0007413621,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02201695,"about_ca_topic_score_gemma":0.0146258,"domain_scores_codex":[0.9999384,0.00001468731,0.000001891199,0.00002235472,0.000008633083,0.00001414947],"domain_scores_gemma":[0.9998698,0.00007462655,0.00002040994,0.000007205662,0.00001490588,0.00001306595],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.00004094246,0.00001395024,0.0008053392,0.00001277806,0.000006759002,0.00002827583,0.00001419643,0.9922096,0.004973041,0.0009580902,0.00004341658,0.0008936142],"study_design_scores_gemma":[0.000005190481,0.00001298786,0.0004326558,9.889424e-7,0.000005210706,0.000004961424,0.000008304115,0.9981648,0.0005761957,0.0006825353,0.0001042155,0.000001940386],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8936594,0.0002156943,0.1006397,0.0001547805,0.00001248221,0.00006019322,0.0008715231,0.0002299492,0.004156329],"genre_scores_gemma":[0.9792589,0.0002188917,0.01784857,0.00002353096,0.000004991431,0.000120848,0.0004892286,0.00002692913,0.00200799],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02201695,"threshold_uncertainty_score":0.04377759,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01803055083970977,"score_gpt":0.23155114348231,"score_spread":0.2135205926426003,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}