{"id":"W1978265247","doi":"10.1016/j.vetimm.2012.05.002","title":"Proteomic analysis of plasma from Holstein cows testing positive for mycobacterium avium subsp. Paratuberculosis (MAP)","year":2012,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":false,"ca_institutions":"Hamilton General Hospital; McMaster University; University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Paratuberculosis; Biology; Mycobacterium avium subspecies paratuberculosis; Proteome; Gelsolin; Molecular biology; Difference gel electrophoresis; Mycobacterium; Blood proteins; Transferrin; Microbiology; Biochemistry; Proteomics; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005258285,0.0003562542,0.001184007,0.0005993351,0.0001964349,0.00001964504,0.0001910009,0.0004459838,0.0001720244],"category_scores_gemma":[0.0005620706,0.0003286405,0.000273128,0.0005434829,0.0005534143,0.0002669733,0.0002588729,0.0003873143,0.00003180612],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007196957,"about_ca_system_score_gemma":0.00008397162,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002901987,"about_ca_topic_score_gemma":0.000003024846,"domain_scores_codex":[0.9974336,0.0004187144,0.0006459337,0.000500877,0.0001261049,0.0008747744],"domain_scores_gemma":[0.9977444,0.0009387413,0.000291313,0.000591831,0.0002627816,0.0001709312],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.003540971,0.0003940246,0.2139814,0.000090189,0.001943902,0.00006531493,0.0005797373,4.885134e-7,0.7768501,0.00005917342,0.00004024284,0.002454471],"study_design_scores_gemma":[0.00218577,0.006080354,0.8890556,0.0000962895,0.00204911,0.0005971198,0.0002005476,0.0001360791,0.09866616,0.00003448066,0.0006139104,0.0002845519],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9934273,0.003756823,0.0001068429,0.0003435674,0.0004811281,0.0009684766,0.0006616908,0.00005913352,0.0001950283],"genre_scores_gemma":[0.9938731,0.0004233814,0.003964125,0.0001519171,0.0001340497,0.0004721852,0.000851207,0.00003870713,0.00009135947],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6781839,"threshold_uncertainty_score":0.9999166,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03739445493733651,"score_gpt":0.3015875147593799,"score_spread":0.2641930598220434,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}