{"id":"W1978273076","doi":"10.1089/cmb.2007.r003","title":"A Parameterized Algorithm for Protein Structure Alignment","year":2007,"lang":"en","type":"article","venue":"Journal of Computational Biology","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Waterloo","funders":"University of Waterloo","keywords":"Parameterized complexity; Algorithm; Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008840741,0.001400172,0.00143889,0.001050166,0.001128365,0.001664838,0.003409894,0.001495192,0.00768911],"category_scores_gemma":[0.004119903,0.0008066549,0.001262264,0.002670021,0.0007942194,0.003906372,0.002011084,0.002046363,0.002852865],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002225499,"about_ca_system_score_gemma":0.002104894,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00470667,"about_ca_topic_score_gemma":0.004820021,"domain_scores_codex":[0.998578,0.0003156962,0.00009990845,0.0004477453,0.0004140581,0.0001447596],"domain_scores_gemma":[0.9986088,0.0004929665,0.0001138024,0.000581424,0.0001416391,0.00006144046],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0005038675,0.0001968563,0.0008088062,0.0003203755,0.000109104,0.0001513837,0.0002212306,0.3129512,0.01325987,0.06958408,0.01478742,0.5871058],"study_design_scores_gemma":[0.00007138059,0.00004928472,0.000154358,0.00001305227,0.00001646817,0.0001174178,0.00004065325,0.9475768,0.002804561,0.04077398,0.008364352,0.00001780199],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.003543445,0.0001338197,0.991896,0.0001106497,0.00002018138,0.00005162226,0.00012637,0.003137179,0.0009806899],"genre_scores_gemma":[0.07399774,0.0002884253,0.9216678,0.00008139942,0.00002690752,0.0002152933,0.001341822,0.0004890295,0.001891619],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.00768911,"threshold_uncertainty_score":0.02572268,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006747070707571181,"score_gpt":0.2753649814743295,"score_spread":0.2686179107667583,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}