{"id":"W1978353478","doi":"10.1093/nar/gku091","title":"An antisense promoter in mouse L1 retrotransposon open reading frame-1 initiates expression of diverse fusion transcripts and limits retrotransposition","year":2014,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":43,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Cancer Institute; National Institutes of Health; University of Pennsylvania; Tulane University; York University; Johns Hopkins University; Ohio State University","keywords":"Retrotransposon; Biology; Open reading frame; Promoter; Genetics; Transcription (linguistics); Long terminal repeat; Transposable element; Gene; Molecular biology; Genome; Gene expression; Peptide sequence","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003225745,0.0005206247,0.0002874706,0.0003768247,0.0002057477,0.0003336234,0.0003372179,0.0003428648,0.0007854807],"category_scores_gemma":[0.0002217885,0.0003504782,0.000365278,0.0002005399,0.0004890614,0.0001978844,0.0002982955,0.0006653164,0.0006149468],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000503285,"about_ca_system_score_gemma":0.0002843227,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003399703,"about_ca_topic_score_gemma":0.0007198468,"domain_scores_codex":[0.9996502,0.00005318446,0.00003333,0.000114926,0.00009435369,0.0000539333],"domain_scores_gemma":[0.9997808,0.00003974942,0.00008762164,0.00002340745,0.00001927421,0.0000491212],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003682584,0.000009609334,0.0001644287,0.0000172849,0.000001507081,0.00001950737,0.00001304261,0.00003599295,0.9988571,0.0001277614,0.00001101571,0.0007058402],"study_design_scores_gemma":[0.00002171058,0.00025085,0.001831565,0.000008933587,0.00002120832,0.0002936991,0.00002454441,0.0008273722,0.9932366,0.00009030403,0.003386721,0.00000651139],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9813111,0.0008557999,0.01575081,0.00009718959,0.00004697603,0.00008148561,0.0004152211,0.0001914009,0.001249964],"genre_scores_gemma":[0.9766834,0.0006203894,0.01674469,0.0000796717,0.00002558952,0.00008804633,0.001355007,0.00007474805,0.004328409],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007854807,"threshold_uncertainty_score":0.003651619,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07006430575766885,"score_gpt":0.3206753773267851,"score_spread":0.2506110715691163,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}