{"id":"W1978424167","doi":"10.1093/molbev/msn279","title":"Near Neutrality, Rate Heterogeneity, and Linkage Govern Mitochondrial Genome Evolution in Atlantic Cod (Gadus morhua) and Other Gadine Fish","year":2008,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"Memorial University of Newfoundland","funders":"","keywords":"Biology; Gadus; Mitochondrial DNA; Evolutionary biology; Genome; Genetics; Atlantic cod; Sister group; Intraspecific competition; Coalescent theory; Balancing selection; Phylogenetic tree; Genetic variation; Gene; Zoology; Clade; Fishery","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003757005,0.0001436411,0.0001600306,0.0007547951,0.0002922609,0.0004711225,0.0002036162,0.0002311443,0.0003143654],"category_scores_gemma":[0.0009177314,0.0001499153,0.0001654916,0.0003698085,0.0004070819,0.0003658445,0.0003333636,0.0001684811,0.00009732919],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002755687,"about_ca_system_score_gemma":0.0001314103,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001648188,"about_ca_topic_score_gemma":0.003448419,"domain_scores_codex":[0.9997532,0.00004180472,0.00002121981,0.00009451687,0.00005744817,0.00003189447],"domain_scores_gemma":[0.9994636,0.0001508805,0.0002387931,0.00004587556,0.00005128352,0.0000496344],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002548114,0.0000296979,0.6779854,0.00008335243,0.0003252319,0.0001837248,0.0008439116,0.001939634,0.3014525,0.0007110949,0.00005498226,0.01613558],"study_design_scores_gemma":[0.000004491513,0.00005846292,0.9917868,0.000005635285,0.00004350657,0.000214125,0.0002551525,0.002571961,0.004199363,0.0004673482,0.0003814941,0.00001158795],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999404,0.0001246962,0.0002413515,0.000006777563,5.711743e-7,0.000001062848,0.0000228861,0.000003631257,0.0001949719],"genre_scores_gemma":[0.999655,0.00005159969,0.0001614348,0.000007805209,0.000001684017,0.000001412507,0.00005963624,0.000003112171,0.00005844196],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001648188,"threshold_uncertainty_score":0.003277183,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01014765895011707,"score_gpt":0.2387222566269556,"score_spread":0.2285745976768385,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}