{"id":"W1978677836","doi":"10.1093/nar/gkt048","title":"Expanding probe repertoire and improving reproducibility in human genomic hybridization","year":2013,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomic variations and chromosomal abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Mitacs; Canada Research Chairs; Compute Canada","keywords":"Biology; DNA microarray; Hybridization probe; Comparative genomic hybridization; Genetics; Genome; Oligomer restriction; Fluorescence in situ hybridization; Molecular probe; Microarray; Repeated sequence; Computational biology; Human genome; Oligonucleotide; Molecular biology; Gene; Chromosome; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01356758,0.001063225,0.001445262,0.001788836,0.0006973409,0.001362417,0.001382985,0.001511917,0.002571919],"category_scores_gemma":[0.02028267,0.001325146,0.0009025267,0.001620062,0.00140044,0.0009742452,0.00219645,0.001302012,0.001190505],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000708124,"about_ca_system_score_gemma":0.0005923028,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004934737,"about_ca_topic_score_gemma":0.001165303,"domain_scores_codex":[0.9815034,0.007797005,0.0009545449,0.005588076,0.003420395,0.0007366014],"domain_scores_gemma":[0.9850021,0.008344791,0.0006650453,0.003945315,0.001838868,0.0002038549],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002427675,0.00005890459,0.00241066,0.0002386778,0.00006565876,0.00009466112,0.0003196454,0.002782931,0.9495336,0.001169809,0.0004942563,0.04258843],"study_design_scores_gemma":[0.00005761715,0.0005009642,0.01391746,0.00005460157,0.0001532877,0.0007718167,0.00009276558,0.02155951,0.9438149,0.002457567,0.01653545,0.00008416217],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.2012717,0.001935284,0.7865458,0.000515526,0.0001773813,0.0005154648,0.0004324069,0.004894849,0.003711653],"genre_scores_gemma":[0.2985356,0.0008570154,0.690445,0.0007209896,0.0001280498,0.002109712,0.001291231,0.001660572,0.004251757],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.01356758,"threshold_uncertainty_score":0.07175308,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0264916943066751,"score_gpt":0.3008894662708305,"score_spread":0.2743977719641554,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}