{"id":"W1978732963","doi":"10.1371/journal.pone.0054238","title":"Phylogenetic and Temporal Dynamics of Human Immunodeficiency Virus Type 1 CRF01_AE in China","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Beijing University of Technology","keywords":"Phylogenetic tree; China; Most recent common ancestor; Biology; Cluster (spacecraft); Men who have sex with men; Phylogenetic relationship; Phylogenetics; Evolutionary biology; Human immunodeficiency virus (HIV); Genetics; Virology; Gene; Geography","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009513688,0.0002344776,0.0003123459,0.002112076,0.0007119696,0.0003782272,0.0003608385,0.0002613744,0.0007728202],"category_scores_gemma":[0.001376744,0.0002083885,0.0002730541,0.002120085,0.0003096868,0.0004559481,0.0004366183,0.0002668269,0.00008593237],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001010551,"about_ca_system_score_gemma":0.0009821076,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0392561,"about_ca_topic_score_gemma":0.04453775,"domain_scores_codex":[0.9995659,0.00006325603,0.00003553896,0.0001096914,0.00008989604,0.0001357781],"domain_scores_gemma":[0.9987256,0.0002132682,0.0004113333,0.0001094117,0.0003161303,0.0002242974],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001279834,0.00002462127,0.9827156,0.00002891355,0.00005603222,0.0002147689,0.0007130103,0.0008589173,0.00371926,0.0001993244,0.000228322,0.01111328],"study_design_scores_gemma":[0.000003482074,0.00002684892,0.9980926,0.000004868293,0.000009454449,0.0001157342,0.0001368047,0.00106271,0.0001572012,0.00004112783,0.0003428925,0.000006204011],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999164,0.0001955812,0.0001440982,0.0000413608,0.000002314018,0.000006625325,0.0001796397,0.000003697151,0.0002627455],"genre_scores_gemma":[0.9991452,0.000125987,0.0001465873,0.00001757368,0.000005275807,0.000008968367,0.0003749796,0.000001389048,0.0001741762],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0392561,"threshold_uncertainty_score":0.0780552,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02367382095908931,"score_gpt":0.2444026715778247,"score_spread":0.2207288506187354,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}