{"id":"W1979079481","doi":"10.1002/bies.20585","title":"Rebuilding microbial genomes","year":2007,"lang":"en","type":"article","venue":"BioEssays","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre","funders":"Michael Smith Health Research BC","keywords":"Genome; Biology; Gene; Synthetic biology; Computational biology; DNA; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002303937,0.0001159348,0.00009225967,0.00005169212,0.00006620931,0.00001854378,0.0001964317,0.0002893308,0.00003043574],"category_scores_gemma":[0.00002073097,0.0001080129,0.00006007541,0.00008118492,0.0000701119,9.672734e-7,0.0001422061,0.00006645823,0.00002547498],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009350304,"about_ca_system_score_gemma":0.00002504859,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008131128,"about_ca_topic_score_gemma":0.00003849923,"domain_scores_codex":[0.9992017,0.00001143148,0.0001607261,0.0002725945,0.00005301585,0.0003005745],"domain_scores_gemma":[0.9995748,0.0000040167,0.00004938504,0.0002746655,0.00003764249,0.00005946179],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004211647,0.00002209074,0.001032292,0.000003804484,0.00001650626,0.000004159939,0.000006784097,4.248808e-7,0.9862828,0.0005408666,0.001585607,0.01046256],"study_design_scores_gemma":[0.0001834591,0.0001098256,0.00136545,0.000002337186,0.000004775041,0.00001888899,0.00001585806,8.565497e-7,0.7009784,0.0000527174,0.2971462,0.0001211984],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9934141,0.0008929903,0.001756258,0.0002142175,0.0005031342,0.0000938627,0.00001296008,0.00002961492,0.003082841],"genre_scores_gemma":[0.9948616,0.0002369769,0.003341259,0.0002541698,0.0006682327,0.000001886752,0.00005144793,0.00001839315,0.0005660506],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2955606,"threshold_uncertainty_score":0.4404637,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00841060990888765,"score_gpt":0.2354495944743095,"score_spread":0.2270389845654219,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}