{"id":"W1979530935","doi":"10.1155/2013/815894","title":"Differentially Methylated Loci Distinguish Ovarian Carcinoma Histological Types: Evaluation of a DNA Methylation Assay in FFPE Tissue","year":2013,"lang":"en","type":"article","venue":"BioMed Research International","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"Calgary Laboratory Services; University of Alberta; University of Calgary; Alberta Health Services","funders":"National Cancer Institute; Canadian Institutes of Health Research; Hospital for Sick Children; University of Calgary; Cancer Research Institute","keywords":"DNA methylation; Methylation; Algorithm; Biology; Computer science; DNA; Gene expression; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003282282,0.0001267075,0.0001584256,0.0004017177,0.00005910483,0.00004903952,0.0003314677,0.0002364009,0.0006415781],"category_scores_gemma":[0.002722952,0.0001158521,0.00005808937,0.0003377074,0.0001572635,0.00001171297,0.0001683557,0.0001770271,0.00002855145],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000165883,"about_ca_system_score_gemma":0.0001945185,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005386821,"about_ca_topic_score_gemma":0.0001552586,"domain_scores_codex":[0.996896,0.0009081898,0.000432575,0.0003946373,0.001088967,0.0002795978],"domain_scores_gemma":[0.9976646,0.0001105335,0.0001452764,0.00025941,0.001729783,0.00009038415],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005589765,0.0001589373,0.009873546,0.00001193081,0.00005699482,0.000001474168,0.000081634,0.00007164098,0.9543365,0.0002975381,0.0004158909,0.03463799],"study_design_scores_gemma":[0.001383531,0.0003180375,0.3995838,0.00002122549,0.00002203826,0.000001304388,0.0000612969,0.01250901,0.5738819,0.005813864,0.006201041,0.0002029944],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9900749,0.0008139955,0.002777641,0.0004895236,0.0004406412,0.0005769335,0.00002439543,0.000007789014,0.004794123],"genre_scores_gemma":[0.9971679,0.00005013162,0.00107649,0.000009200803,0.0002878268,0.0001203831,0.0008496358,0.00001620001,0.0004222051],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3897102,"threshold_uncertainty_score":0.7024831,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08340040315253552,"score_gpt":0.3938067723853619,"score_spread":0.3104063692328264,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}