{"id":"W1979531488","doi":"10.1089/aid.2006.0089","title":"Investigating Signs of Recent Evolution in the Pool of Proviral HIV Type 1 DNA during Years of Successful HAART","year":2007,"lang":"en","type":"article","venue":"AIDS Research and Human Retroviruses","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"AIDS Fondet","keywords":"Akaike information criterion; Phylogenetic tree; Biology; Genome; Viral evolution; Human immunodeficiency virus (HIV); Phylogenetics; Genetics; Gene; Computational biology; Virology; Evolutionary biology; Statistics; Mathematics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001056875,0.0001321582,0.0003058457,0.000407328,0.0003292365,0.0005011112,0.0002384221,0.0003346663,0.0006328368],"category_scores_gemma":[0.003012144,0.0001295375,0.0002329277,0.0004013352,0.0002605576,0.0003521778,0.0002606492,0.0003313263,0.0001099398],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002961485,"about_ca_system_score_gemma":0.0001954228,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001026435,"about_ca_topic_score_gemma":0.00156228,"domain_scores_codex":[0.9997088,0.0001121422,0.00002424325,0.0000580954,0.00005119796,0.00004550807],"domain_scores_gemma":[0.9986975,0.0006572609,0.0003190603,0.00008419473,0.0001075795,0.0001343479],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006354617,0.00007108175,0.9611695,0.00005376534,0.0001459844,0.0006660986,0.0006194314,0.002672085,0.02368115,0.0002355452,0.00005437111,0.0099955],"study_design_scores_gemma":[0.00001533358,0.0007620745,0.9804779,0.00001307105,0.0001010791,0.002145883,0.0005704651,0.00865867,0.006414775,0.0002192438,0.0006064771,0.00001507312],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999576,0.0001022653,0.0002146902,0.000008482071,5.398013e-7,0.00000184554,0.00002723585,0.00000135113,0.00006756911],"genre_scores_gemma":[0.9997008,0.00003152196,0.0001430093,0.000005886323,0.000002022976,0.000002654282,0.00007625518,9.898654e-7,0.00003696308],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001056875,"threshold_uncertainty_score":0.005589366,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06567347015282175,"score_gpt":0.3543458819454787,"score_spread":0.2886724117926569,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}