{"id":"W1979587445","doi":"10.1021/bi0607150","title":"NMR Structure of Varkud Satellite Ribozyme Stem−Loop V in the Presence of Magnesium Ions and Localization of Metal-Binding Sites<sup>,</sup>","year":2006,"lang":"en","type":"article","venue":"Biochemistry","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"","keywords":"Ribozyme; Magnesium; Loop (graph theory); Chemistry; Satellite; Ion; Metal ions in aqueous solution; Metal; Physics; Crystallography; RNA; Biochemistry; Astronomy","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004533838,0.0001194905,0.0001084058,0.00006019832,0.0001099226,0.0001432341,0.0002125257,0.0002116751,0.0005369541],"category_scores_gemma":[0.0001191186,0.00007242874,0.0001327486,0.00007937128,0.0001370113,0.0001223238,0.00006376325,0.0001622018,0.00008513549],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003518092,"about_ca_system_score_gemma":0.0001225068,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001679844,"about_ca_topic_score_gemma":0.002408442,"domain_scores_codex":[0.9999731,0.000004547408,0.000001298589,0.000007888886,0.000007650204,0.000005536609],"domain_scores_gemma":[0.9999516,0.000009393419,0.00001705646,0.000002503346,0.000006313941,0.00001315293],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002219926,0.00001127575,0.00104242,0.00005739358,0.00000940892,0.0001543332,0.0000685792,0.00164237,0.9945526,0.0002333932,0.0001188559,0.001887565],"study_design_scores_gemma":[0.00007833763,0.0007017531,0.04380226,0.00002937283,0.00006391963,0.0006268687,0.0003130626,0.0445703,0.9036967,0.0006446082,0.005428492,0.00004437568],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980719,0.0002133376,0.001019878,0.00003492259,0.000005020656,0.00000213108,0.0001101583,0.00003358364,0.0005090294],"genre_scores_gemma":[0.9977481,0.00009295094,0.001262032,0.00002505267,0.000002382673,0.00000305559,0.0005110732,0.000007741514,0.0003476182],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001679844,"threshold_uncertainty_score":0.003340125,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008001374861371674,"score_gpt":0.2153905028964345,"score_spread":0.2073891280350628,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}