{"id":"W1979613935","doi":"10.1094/mpmi-01-15-0003-r","title":"Candidate Effector Proteins of the Rust Pathogen <i>Melampsora larici-populina</i> Target Diverse Plant Cell Compartments","year":2015,"lang":"en","type":"article","venue":"Molecular Plant-Microbe Interactions","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":184,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Institut National de la Recherche Agronomique; Agence Nationale de la Recherche; European Commission; Université du Québec à Trois-Rivières; Gatsby Charitable Foundation; Université de Moncton; Leverhulme Trust; Université de Lorraine","keywords":"Effector; Nicotiana benthamiana; Biology; Rust (programming language); Cell biology; Subcellular localization; Proteomics; Genome; Obligate; Computational biology; Genetics; Gene; Botany; Cytoplasm","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002118432,0.0003052066,0.000334422,0.00004323228,0.0003877278,0.0001050158,0.0006244075,0.0001209569,0.0002394017],"category_scores_gemma":[0.00007412183,0.0001336346,0.0002514148,0.0003320246,0.00008921989,0.0002321967,0.0003236878,0.0005138064,0.0001916209],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000122978,"about_ca_system_score_gemma":0.0000506067,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003671597,"about_ca_topic_score_gemma":0.003289415,"domain_scores_codex":[0.9981596,0.0003414688,0.0004441066,0.0003540837,0.0002897566,0.0004109429],"domain_scores_gemma":[0.9988844,0.0001671258,0.0003531012,0.0002542087,0.0001682464,0.0001728632],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001225141,0.0005093706,0.002063452,0.00001339179,0.0000648418,0.00004208415,0.000194796,0.00006964373,0.9626895,0.00001671278,0.03399253,0.0002211194],"study_design_scores_gemma":[0.000560427,0.00025514,0.0030866,0.000146757,0.00009159875,0.0002222283,0.0007457907,0.0001410006,0.5944275,0.00003558249,0.3998989,0.0003884604],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9860272,0.0001089214,0.00007856199,0.0002934202,0.00315364,0.0006333353,0.008566143,0.00006395509,0.001074776],"genre_scores_gemma":[0.9964517,0.00001553666,0.0002995728,0.0002606797,0.0002465975,0.00004940023,0.002184312,0.000005212989,0.0004870203],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3682621,"threshold_uncertainty_score":0.5550381,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01872201376008282,"score_gpt":0.2180177292929172,"score_spread":0.1992957155328344,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}