{"id":"W1979618843","doi":"10.1094/phyto-04-10-0107","title":"Genetic and Morphological Evidence that <i>Phoma sclerotioides</i>, Causal Agent of Brown Root Rot of Alfalfa, Is Composed of a Species Complex","year":2010,"lang":"en","type":"article","venue":"Phytopathology","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Agriculture and Agri-Food Canada; New Mexico State University; Colorado State University Extension; University of Wisconsin-Madison; Colorado State University; Pennsylvania State University; Agricultural Research Service; Montana State University; University of Wyoming; U.S. Department of Agriculture","keywords":"Biology; Root rot; Botany; Phoma; Genetic diversity; Phylogenetic tree; Clade; Horticulture; Gene; Genetics; Population","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001532806,0.000179401,0.0004178961,0.000057411,0.00003535566,0.00000511532,0.0002331933,0.0001700279,0.0001039123],"category_scores_gemma":[0.0001479948,0.0001587039,0.0001243343,0.00006999695,0.0006530155,0.000004729622,0.0002030862,0.000105795,0.000001858519],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000002861532,"about_ca_system_score_gemma":0.00004175178,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000289251,"about_ca_topic_score_gemma":0.00006544769,"domain_scores_codex":[0.9987991,0.0001046976,0.0003599068,0.0003641225,0.0001484502,0.0002237278],"domain_scores_gemma":[0.9990126,0.00005839686,0.0003158941,0.0003967689,0.0001247274,0.00009158545],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001493025,0.0001295127,0.2678834,0.00006825304,0.00001776482,0.00002996001,0.00003101887,0.000008309936,0.7310028,0.00005915278,0.0002891677,0.000331351],"study_design_scores_gemma":[0.0002823414,0.0003947214,0.6188239,0.00002320688,0.00003385645,0.0001630752,0.00001178998,0.00002308486,0.3796629,0.00005223068,0.0004303898,0.00009842956],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967172,0.001454607,0.000364981,0.00006590055,0.0001190132,0.0002066036,0.0008766527,0.000005772059,0.0001893148],"genre_scores_gemma":[0.9975966,0.0004029361,0.001673068,0.0001414515,0.00006924933,0.00001169322,0.00005555611,0.00001222925,0.00003724452],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3513398,"threshold_uncertainty_score":0.6471756,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04587944825750457,"score_gpt":0.2588204949256876,"score_spread":0.2129410466681831,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}