{"id":"W1979658391","doi":"10.1093/nar/gkq197","title":"Unconstrained mining of transcript data reveals increased alternative splicing complexity in the human transcriptome","year":2010,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"BC Cancer Agency; European Commission; Fundação para a Ciência e a Tecnologia; Muscular Dystrophy Association","keywords":"Biology; Exon; Intron; RNA splicing; Alternative splicing; Gene; Genetics; splice; Polypyrimidine tract; Computational biology; Transcriptome; Exon skipping; Human genome; RNA; Gene expression; Genome","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006786482,0.0001634579,0.000482022,0.001032238,0.0003232648,0.0007777357,0.0002209828,0.0002937877,0.0006130791],"category_scores_gemma":[0.001617902,0.0001636561,0.0004027088,0.001588532,0.0003366239,0.0003629581,0.0003713035,0.0003495287,0.0003592195],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001960604,"about_ca_system_score_gemma":0.0002881193,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004036323,"about_ca_topic_score_gemma":0.001088592,"domain_scores_codex":[0.9994394,0.0001115073,0.0000658281,0.0002125537,0.0001282329,0.00004238241],"domain_scores_gemma":[0.9988016,0.0007818101,0.0001655592,0.0001073544,0.00009464003,0.00004911087],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001282841,0.000148237,0.195858,0.0008201221,0.0003284609,0.00300622,0.001235625,0.01573066,0.5642875,0.001817277,0.001687412,0.2137976],"study_design_scores_gemma":[0.00009749295,0.0006500667,0.651614,0.0001886971,0.0004036168,0.01298056,0.001586296,0.1697913,0.1166383,0.01994719,0.02598432,0.0001182331],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9667067,0.001079809,0.02833024,0.0002197516,0.00001014617,0.00002328403,0.002821088,0.0002205885,0.0005883856],"genre_scores_gemma":[0.9451974,0.00082809,0.0435425,0.0001033141,0.0000330128,0.00005700396,0.009649074,0.00006845559,0.0005211586],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001032238,"threshold_uncertainty_score":0.003589034,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1450955276750008,"score_gpt":0.4039190281339851,"score_spread":0.2588235004589843,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}