{"id":"W1979729202","doi":"10.1063/1.3663485","title":"Identification of transposon insertion polymorphisms by computational comparative analysis of next generation personal genome data","year":2011,"lang":"en","type":"article","venue":"AIP conference proceedings","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Brock University","funders":"","keywords":"Transposable element; Genome; Identification (biology); Structural variation; Copy-number variation; Genetics; Computational biology; Biology; Computer science; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00268999,0.0007043428,0.0009736908,0.002685748,0.0007277525,0.0008648934,0.001183296,0.000714106,0.0007959259],"category_scores_gemma":[0.006936103,0.0005077406,0.001660874,0.002056662,0.0005792911,0.0007209933,0.0007086222,0.00079498,0.0001160303],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001060894,"about_ca_system_score_gemma":0.001635662,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01087825,"about_ca_topic_score_gemma":0.0125411,"domain_scores_codex":[0.9994522,0.0002040356,0.00003669198,0.0001426182,0.0001211575,0.00004325747],"domain_scores_gemma":[0.9971305,0.002260999,0.000170426,0.0001636413,0.0001855319,0.00008891874],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0006882892,0.0002543609,0.02687232,0.0002501119,0.0009257706,0.0003821098,0.0002008177,0.919032,0.01148261,0.004173751,0.001424854,0.03431297],"study_design_scores_gemma":[0.00002236092,0.00003239197,0.002460281,0.000005029248,0.00005066689,0.00003677359,0.00003468725,0.9940753,0.001485336,0.001408464,0.0003755312,0.00001327036],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8871283,0.0002967493,0.1068375,0.0002864294,0.0000369571,0.00009377807,0.002684327,0.001618946,0.001016986],"genre_scores_gemma":[0.7216771,0.0001980753,0.2701925,0.0001490122,0.00002095614,0.0002552609,0.007046316,0.0002234746,0.000237361],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01087825,"threshold_uncertainty_score":0.02162981,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1492385630761364,"score_gpt":0.267279909755394,"score_spread":0.1180413466792576,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}