{"id":"W1980091729","doi":"10.3201/eid1410.080102","title":"Endemic and Epidemic Lineages of<i>Escherichia coli</i>that Cause Urinary Tract Infections","year":2008,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"Urinary Tract Infections Management","field":"Medicine","cited_by":118,"is_retracted":false,"has_abstract":true,"ca_institutions":"Research Manitoba; McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research; Department of Epidemiology, Biostatistics and Occupational Health, McGill University; McGill University Health Centre; Canadian Association of Gastroenterology; McGill University","keywords":"Multilocus sequence typing; Biology; Escherichia coli; Serotype; Microbiology; Intergenic region; Typing; Transmission (telecommunications); Molecular epidemiology; Phylogenetic tree; Virology; Genotype; Genetics; Genome; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001593907,0.0003303388,0.0005240872,0.0005150456,0.0004418719,0.00001576668,0.00007357806,0.0001102922,0.0002182221],"category_scores_gemma":[0.000331812,0.0003383645,0.0002496782,0.0005787186,0.0002960231,0.0003289294,0.00009838241,0.0003676141,0.00003631451],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001395079,"about_ca_system_score_gemma":0.0001399383,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002348067,"about_ca_topic_score_gemma":0.000008661389,"domain_scores_codex":[0.9982859,0.0001257985,0.0004726461,0.0004435894,0.0002864936,0.0003855078],"domain_scores_gemma":[0.9985583,0.0002905533,0.0002381076,0.000480788,0.0001173406,0.0003148624],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00005864834,0.00911181,0.9863003,0.0002471397,0.0003968992,0.0003169054,0.0003183828,0.0004193618,0.000719808,0.00009531665,0.001652122,0.0003632914],"study_design_scores_gemma":[0.001587218,0.003175483,0.9778261,0.0001477472,0.0009272873,0.002364423,0.0001141819,0.0002214673,0.0004315114,0.00008904473,0.01276515,0.0003504473],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9918754,0.002242095,0.0004689436,0.0002874545,0.0005224748,0.0006105961,0.00002228624,0.0006194559,0.003351334],"genre_scores_gemma":[0.9944667,0.003966272,0.0001120525,0.0003026572,0.0002970712,0.0001324103,0.00003616953,0.00006077387,0.0006258856],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01111303,"threshold_uncertainty_score":0.9999068,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02712943110852757,"score_gpt":0.2873101005420081,"score_spread":0.2601806694334806,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}