{"id":"W1980091729","doi":"10.3201/eid1410.080102","title":"Endemic and Epidemic Lineages of<i>Escherichia coli</i>that Cause Urinary Tract Infections","year":2008,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"Urinary Tract Infections Management","field":"Medicine","cited_by":118,"is_retracted":false,"has_abstract":true,"ca_institutions":"Research Manitoba; McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research; Department of Epidemiology, Biostatistics and Occupational Health, McGill University; McGill University Health Centre; Canadian Association of Gastroenterology; McGill University","keywords":"Multilocus sequence typing; Biology; Escherichia coli; Serotype; Microbiology; Intergenic region; Typing; Transmission (telecommunications); Molecular epidemiology; Phylogenetic tree; Virology; Genotype; Genetics; Genome; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002695236,0.0001606374,0.000133923,0.0005143397,0.0005301898,0.0003229561,0.0002493395,0.0001862409,0.0009415922],"category_scores_gemma":[0.001106414,0.0001574951,0.00009367933,0.0004541031,0.000289965,0.0001739805,0.0003093819,0.0002532938,0.00005472057],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001014916,"about_ca_system_score_gemma":0.0008230206,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0976839,"about_ca_topic_score_gemma":0.1442164,"domain_scores_codex":[0.9997246,0.00004168043,0.00001644774,0.00006173972,0.00005262789,0.0001029317],"domain_scores_gemma":[0.9994665,0.00006674282,0.0002273453,0.00002975647,0.00009978509,0.0001098093],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001019965,0.00003806091,0.9915845,0.000009956413,0.00001066725,0.0002358219,0.0002712466,0.00007573325,0.00263969,0.00004251748,0.0001380462,0.00485173],"study_design_scores_gemma":[0.000007836985,0.00006023814,0.9982452,0.000007338067,0.00000877992,0.0006931983,0.0003141089,0.0001340833,0.0002785909,0.00001659294,0.0002315528,0.000002324926],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994587,0.00009335046,0.00005717522,0.00002111305,9.918282e-7,0.00000761269,0.00005866891,0.000002604108,0.0002998769],"genre_scores_gemma":[0.9994869,0.00008978637,0.0001566954,0.00002290615,0.000004566582,0.000002880799,0.0001505333,8.926266e-7,0.00008488392],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0976839,"threshold_uncertainty_score":0.1942307,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02712943110852757,"score_gpt":0.2873101005420081,"score_spread":0.2601806694334806,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}