{"id":"W1980300527","doi":"10.1186/1471-2164-11-667","title":"Genome sequence of adherent-invasive Escherichia coli and comparative genomic analysis with other E. coli pathotypes","year":2010,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":195,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; Public Health Agency of Canada","funders":"Ontario Ministry of Research and Innovation; Canadian Institutes of Health Research; Directorate for Biological Sciences; University of Alberta","keywords":"Biology; Genome; Escherichia coli; Genetics; Whole genome sequencing; Gene; Phylogenetic tree; Virulence; Phenotype; Comparative genomics; Microbiology; Genomics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002280103,0.0004468692,0.000415214,0.001343491,0.0002859797,0.0003489096,0.0003189681,0.0006374253,0.001064573],"category_scores_gemma":[0.0006351053,0.0001501337,0.0007690819,0.00225275,0.0002364131,0.0001545274,0.0002650534,0.0006236765,0.0008936074],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002964346,"about_ca_system_score_gemma":0.000500349,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003200433,"about_ca_topic_score_gemma":0.002965626,"domain_scores_codex":[0.9997614,0.0000314916,0.00002075636,0.000069986,0.00006593281,0.00005042157],"domain_scores_gemma":[0.9994491,0.0001407915,0.0001062484,0.00005603375,0.0001546668,0.0000931699],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001415789,0.0003239683,0.02065465,0.001039312,0.000135301,0.001383231,0.0005016224,0.001018576,0.9433621,0.000492067,0.001065744,0.02860757],"study_design_scores_gemma":[0.0001473678,0.001279344,0.8154206,0.0002363569,0.0006161771,0.005223145,0.001013959,0.003880583,0.1039255,0.0008318978,0.06734359,0.00008141089],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9477981,0.002817377,0.008813423,0.0002619081,0.00009330431,0.000235896,0.03506511,0.0001815488,0.004733308],"genre_scores_gemma":[0.8135694,0.002633791,0.04498821,0.0004484658,0.00007100613,0.0002421295,0.135723,0.0001412171,0.00218271],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003200433,"threshold_uncertainty_score":0.00636363,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03722410924591128,"score_gpt":0.2855169762492979,"score_spread":0.2482928670033866,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}