{"id":"W1980425356","doi":"10.1371/journal.pone.0087611","title":"Comparative Genomics of Isolates of a Pseudomonas aeruginosa Epidemic Strain Associated with Chronic Lung Infections of Cystic Fibrosis Patients","year":2014,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":103,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ottawa Hospital; Institut Universitaire de Cardiologie et de Pneumologie de Québec","funders":"Fonds de Recherche du Québec - Santé; Institut universitaire de cardiologie et de pneumologie de Québec, Université Laval; Cystic Fibrosis Canada; Canadian Institutes of Health Research; Leverhulme Trust; Université Laval","keywords":"Cystic fibrosis; Pseudomonas aeruginosa; Strain (injury); Microbiology; Genomics; Lung infection; Biology; Medicine; Lung; Genome; Genetics; Bacteria; Internal medicine; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001108239,0.000112887,0.0003645872,0.00003703277,0.00003041392,0.00000331332,0.00006499035,0.0001066478,0.000007254657],"category_scores_gemma":[0.0001371076,0.0001031575,0.00005645733,0.00008760352,0.000120079,0.000003965633,0.0000402187,0.00005794579,5.156297e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002617923,"about_ca_system_score_gemma":0.00006141012,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005616715,"about_ca_topic_score_gemma":0.0001006906,"domain_scores_codex":[0.999225,0.00008987306,0.000302495,0.0001568456,0.00008172586,0.0001441213],"domain_scores_gemma":[0.9991413,0.00006323968,0.0003647323,0.0001720259,0.0002233073,0.0000353781],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008618732,0.0006092599,0.02187137,0.00009014462,0.0003918101,2.908286e-8,0.00008183794,0.00008466636,0.9766985,0.00001685313,0.00001289475,0.00005641454],"study_design_scores_gemma":[0.0007765422,0.001427571,0.03782546,0.0002456511,0.0001766409,2.82466e-7,0.00001339728,0.001191669,0.9582065,0.000008847076,0.00001045887,0.0001170043],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992087,0.00009491844,0.0001636375,0.00001043044,0.00001806719,0.0001880522,0.000219784,0.000004829299,0.00009161216],"genre_scores_gemma":[0.9986283,0.00002714754,0.001010782,0.000008183695,0.00003392958,0.000003308691,0.000264313,0.00001166231,0.00001233207],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01849206,"threshold_uncertainty_score":0.4206639,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01473220319408648,"score_gpt":0.2190574908613042,"score_spread":0.2043252876672178,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}