{"id":"W1980425356","doi":"10.1371/journal.pone.0087611","title":"Comparative Genomics of Isolates of a Pseudomonas aeruginosa Epidemic Strain Associated with Chronic Lung Infections of Cystic Fibrosis Patients","year":2014,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":103,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ottawa Hospital; Institut Universitaire de Cardiologie et de Pneumologie de Québec","funders":"Fonds de Recherche du Québec - Santé; Institut universitaire de cardiologie et de pneumologie de Québec, Université Laval; Cystic Fibrosis Canada; Canadian Institutes of Health Research; Leverhulme Trust; Université Laval","keywords":"Cystic fibrosis; Pseudomonas aeruginosa; Strain (injury); Microbiology; Genomics; Lung infection; Biology; Medicine; Lung; Genome; Genetics; Bacteria; Internal medicine; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001069187,0.00030976,0.0003582558,0.0005849414,0.0003036559,0.0003469991,0.0001572139,0.0002700854,0.0004661679],"category_scores_gemma":[0.0005489413,0.0001144016,0.0003310286,0.0009754843,0.0001946384,0.00008132366,0.0002501174,0.0003554551,0.0001580825],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005048626,"about_ca_system_score_gemma":0.0004866985,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.03849208,"about_ca_topic_score_gemma":0.03448049,"domain_scores_codex":[0.9997781,0.00002476664,0.00001621945,0.00004819502,0.00007058481,0.00006217123],"domain_scores_gemma":[0.9996386,0.00007492524,0.00009418635,0.00002099286,0.0001001369,0.00007125456],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001223642,0.0001403683,0.1496525,0.0001763695,0.000118265,0.002544894,0.00161505,0.0005341698,0.8342654,0.000105532,0.0002528199,0.009371052],"study_design_scores_gemma":[0.000014277,0.0003616629,0.9780693,0.00001430923,0.00007084531,0.002504959,0.0009866812,0.0006133464,0.01591203,0.00002663219,0.001413887,0.00001211572],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987642,0.0001110227,0.0001585649,0.00001646516,0.000001575592,0.000009298621,0.0007475686,0.000003653427,0.0001876372],"genre_scores_gemma":[0.9946131,0.0001703578,0.0009014973,0.00004463916,0.000004370495,0.0000146489,0.003916398,0.000008819932,0.0003261515],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03849208,"threshold_uncertainty_score":0.07653606,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01473220319408648,"score_gpt":0.2190574908613042,"score_spread":0.2043252876672178,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}