{"id":"W1980516963","doi":"10.1038/ng.473","title":"Global patterns of cis variation in human cells revealed by high-density allelic expression analysis","year":2009,"lang":"en","type":"article","venue":"Nature Genetics","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":219,"is_retracted":false,"has_abstract":false,"ca_institutions":"McGill University; Centre Hospitalier Universitaire Sainte-Justine; Université de Montréal; McGill University Health Centre; McGill University and Génome Québec Innovation Centre","funders":"National Center for Research Resources","keywords":"Biology; International HapMap Project; Genetics; Single-nucleotide polymorphism; RefSeq; Allele; Gene; Genetic variation; Copy-number variation; Genome; Computational biology; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001633442,0.0001123052,0.0001832131,0.00006919126,0.00003755796,0.00001295655,0.0001957357,0.0003776548,0.00001202787],"category_scores_gemma":[0.00002588183,0.0001072362,0.00008829027,0.000272059,0.00001283061,0.000002104323,0.0000577388,0.0001566041,5.39704e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002623976,"about_ca_system_score_gemma":0.00002227012,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001292678,"about_ca_topic_score_gemma":0.00029909,"domain_scores_codex":[0.9989712,0.00007782289,0.0002188354,0.0002921753,0.0002329493,0.0002069751],"domain_scores_gemma":[0.9993866,0.000004858657,0.00009376369,0.0003457949,0.00009895398,0.00006999048],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003992337,0.00007259852,0.05064695,0.000007494911,0.00004298291,0.000003325298,0.0000132205,0.0004091287,0.9467824,0.000007153279,0.001190786,0.0007840724],"study_design_scores_gemma":[0.0003543198,0.0001604028,0.5030275,0.000007900217,0.00003248837,3.901968e-7,0.000006123687,0.0001290444,0.495968,0.00007911552,0.0001422849,0.00009241227],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9949329,0.000720976,0.004006307,0.00006353039,0.00003509653,0.0001165354,0.00006187065,0.000004358363,0.00005842658],"genre_scores_gemma":[0.9980066,0.0002711064,0.001013418,0.0001669823,0.00008456698,0.000001748561,0.0002377655,0.000005402273,0.0002124509],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4523806,"threshold_uncertainty_score":0.4372966,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004218139956606074,"score_gpt":0.2702416831374959,"score_spread":0.2660235431808898,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}