{"id":"W1981493394","doi":"10.1111/j.1462-2920.2008.01823.x","title":"A genomic island of the sulfate‐reducing bacterium <i>Desulfovibrio vulgaris</i> Hildenborough promotes survival under stress conditions while decreasing the efficiency of anaerobic growth","year":2008,"lang":"en","type":"article","venue":"Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"","keywords":"Desulfovibrio vulgaris; Biology; Microaerophile; Pathogenicity island; Microbiology; Gene; Genomic island; Sulfur metabolism; Anaerobic exercise; Recombinase; Bacteria; Genetics; Virulence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002569354,0.0002528833,0.0003724884,0.00003196091,0.0006838933,0.000005076557,0.0008211266,0.0001945163,0.002715489],"category_scores_gemma":[0.00002287218,0.0001748395,0.0001579533,0.0001662695,0.003388339,0.00008511254,0.0008047243,0.0003875371,0.00008205544],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001419635,"about_ca_system_score_gemma":0.00003498198,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009838329,"about_ca_topic_score_gemma":0.0008522552,"domain_scores_codex":[0.9978746,0.0008095669,0.0004623201,0.0003621939,0.00006980357,0.0004214793],"domain_scores_gemma":[0.998696,0.0003182167,0.000349779,0.0005843415,0.000005363751,0.00004626911],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004068972,0.0003241125,0.06708299,0.000007998961,0.00004350335,0.000001336812,0.001048752,0.000909465,0.9300545,0.00004780291,0.0004278951,0.00001094801],"study_design_scores_gemma":[0.0007413193,0.0002697805,0.6165954,0.00002517089,0.00006613618,0.0002763048,0.0004177236,0.00002841679,0.3803859,0.0002526176,0.0006463118,0.0002949068],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980374,0.0001063478,0.00004826553,0.0002100703,0.0002811732,0.000431745,0.0004780503,0.00001205029,0.000394875],"genre_scores_gemma":[0.9991933,0.00009058434,0.0001090081,0.0001815009,0.00002823103,0.0000110693,0.0002486608,0.00002086742,0.0001168257],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5496686,"threshold_uncertainty_score":0.9993238,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009663141399276732,"score_gpt":0.1881746104225719,"score_spread":0.1785114690232952,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}