{"id":"W1981549976","doi":"10.1513/annalsats.201306-159mg","title":"The Cystic Fibrosis Lung Microbiome","year":2014,"lang":"en","type":"article","venue":"Annals of the American Thoracic Society","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":197,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; Hamilton Health Sciences","funders":"Canadian Institutes of Health Research","keywords":"Cystic fibrosis; Microbiome; Stenotrophomonas maltophilia; Medicine; Pseudomonas aeruginosa; Obligate anaerobe; Stenotrophomonas; Microbiology; Burkholderia; Mycobacterium abscessus; Staphylococcus aureus; Obligate; Pathogen; Airway; Immunology; Biology; Bacteria; Pathology; Bioinformatics; Pseudomonas; Internal medicine; Mycobacterium; Tuberculosis","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005943278,0.00013717,0.0002325141,0.0005669419,0.0009419314,0.001422246,0.0001440552,0.0005874391,0.003471944],"category_scores_gemma":[0.00118174,0.0000891848,0.0001492994,0.0004301159,0.0004496336,0.0005611139,0.0009814369,0.0004586192,0.000798098],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004508048,"about_ca_system_score_gemma":0.0009717941,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002165901,"about_ca_topic_score_gemma":0.002703852,"domain_scores_codex":[0.9995698,0.0001267565,0.00001889425,0.00005872004,0.0001395922,0.00008615168],"domain_scores_gemma":[0.999644,0.00006385102,0.00006119704,0.00002175391,0.00008589916,0.000123202],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.0002627762,0.00009667908,0.1574821,0.001198744,0.0001231365,0.002941977,0.004808388,0.0005860124,0.1683826,0.009298255,0.06121942,0.5936],"study_design_scores_gemma":[0.00002298159,0.0002733891,0.4242522,0.001366625,0.0000713204,0.0081123,0.004731543,0.0007873265,0.006426854,0.007278875,0.5466167,0.00005981145],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7576674,0.1164767,0.007662183,0.03968852,0.001665782,0.0001824927,0.003843712,0.000270912,0.07254238],"genre_scores_gemma":[0.9308847,0.04147413,0.007869761,0.006193168,0.000710545,0.00008787747,0.00128932,0.00004100134,0.01144952],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003471944,"threshold_uncertainty_score":0.0116148,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0401315452842777,"score_gpt":0.4013824114176972,"score_spread":0.3612508661334195,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}