{"id":"W1981549976","doi":"10.1513/annalsats.201306-159mg","title":"The Cystic Fibrosis Lung Microbiome","year":2014,"lang":"en","type":"article","venue":"Annals of the American Thoracic Society","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":197,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; Hamilton Health Sciences","funders":"Canadian Institutes of Health Research","keywords":"Cystic fibrosis; Microbiome; Stenotrophomonas maltophilia; Medicine; Pseudomonas aeruginosa; Obligate anaerobe; Stenotrophomonas; Microbiology; Burkholderia; Mycobacterium abscessus; Staphylococcus aureus; Obligate; Pathogen; Airway; Immunology; Biology; Bacteria; Pathology; Bioinformatics; Pseudomonas; Internal medicine; Mycobacterium; Tuberculosis","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009964424,0.0001646463,0.0003857948,0.00002275752,0.0003524381,0.00003610135,0.0005222549,0.00003285846,0.00001741382],"category_scores_gemma":[0.00115687,0.00008718492,0.0005699676,0.0007783205,0.001749326,0.00005775769,0.0002378871,0.0002654525,0.00002297897],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003696039,"about_ca_system_score_gemma":0.0000969657,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001119019,"about_ca_topic_score_gemma":0.000004343355,"domain_scores_codex":[0.9981911,0.0002482639,0.000302079,0.0002474025,0.0005147855,0.000496414],"domain_scores_gemma":[0.9971507,0.001185477,0.0003581651,0.0009075862,0.0002609411,0.0001371771],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001110842,0.0002127323,0.01437431,0.0005081312,0.0006844917,0.000001347826,0.0009337029,0.00005692913,0.4352759,0.0002329121,0.2401434,0.3064653],"study_design_scores_gemma":[0.001021634,0.001895052,0.3439165,0.001015418,0.0004147367,0.00009765635,0.003590015,0.01040547,0.290922,0.002353123,0.3436449,0.0007234542],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9640456,0.002434814,0.002325663,0.0294357,0.00019183,0.00058879,0.00004494513,0.00008153533,0.0008511154],"genre_scores_gemma":[0.986842,0.0006367881,0.008462316,0.002595142,0.000162646,0.00002600153,0.000005363247,0.00003213289,0.001237588],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3295422,"threshold_uncertainty_score":0.6445464,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0401315452842777,"score_gpt":0.4013824114176972,"score_spread":0.3612508661334195,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}