{"id":"W1981693566","doi":"10.3390/computation2040182","title":"Incongruencies in Vaccinia Virus Phylogenetic Trees","year":2014,"lang":"en","type":"article","venue":"Computation","topic":"Poxvirus research and outbreaks","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Lethbridge; University of Victoria","funders":"University of Victoria","keywords":"Cowpox virus; Cowpox; Biology; Phylogenetic tree; Genome; Orthopoxvirus; Clade; Vaccinia; Modified vaccinia Ankara; Poxviridae; Virology; Ectromelia virus; Genetics; Evolutionary biology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006532389,0.0003795805,0.001053399,0.006472934,0.002519071,0.004058243,0.0008908322,0.0008741561,0.002241617],"category_scores_gemma":[0.03537482,0.000609415,0.0006793358,0.003704543,0.001648863,0.001908297,0.00178363,0.001163305,0.0004935281],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008672667,"about_ca_system_score_gemma":0.0006545263,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005513198,"about_ca_topic_score_gemma":0.0009594799,"domain_scores_codex":[0.9952542,0.002216751,0.0003506536,0.0009841553,0.0008009986,0.0003933191],"domain_scores_gemma":[0.9846622,0.01129627,0.001305544,0.0009899305,0.001050572,0.0006955698],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.003618729,0.0002792081,0.5399085,0.001985165,0.001695333,0.004344107,0.02146317,0.07829578,0.05240718,0.1338613,0.01010745,0.1520342],"study_design_scores_gemma":[0.0002439014,0.000370628,0.2944662,0.000584616,0.0005365659,0.003470542,0.006867405,0.2875715,0.006348268,0.359473,0.03980778,0.0002594868],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9585387,0.002479275,0.02887736,0.0004910748,0.0001248925,0.00007715276,0.001618527,0.0002501209,0.007542927],"genre_scores_gemma":[0.9847697,0.0003751489,0.01170214,0.00008825296,0.00007661979,0.00005271051,0.002590028,0.00008186917,0.0002634118],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006532389,"threshold_uncertainty_score":0.03454697,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01499583527062454,"score_gpt":0.2683748898216397,"score_spread":0.2533790545510152,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}