{"id":"W1981741911","doi":"10.3852/08-071","title":"<i>Pleospora</i>species with<i>Stemphylium</i>anamorphs: a four locus phylogeny resolves new lineages yet does not distinguish among species in the<i>Pleospora herbarum</i>clade","year":2009,"lang":"en","type":"article","venue":"Mycologia","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":71,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Dothideomycetes; Clade; Species complex; Intergenic region; Phylogenetic tree; Phylogenetics; Botany; Genetics; Zoology; Gene; Genome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003308409,0.0005212061,0.0005043228,0.0001031325,0.0002364275,0.0001853063,0.0008054095,0.0003032745,0.00006822134],"category_scores_gemma":[0.0004801471,0.0003232961,0.0002136204,0.0003804923,0.0002991287,0.0000197714,0.0001261529,0.0003152059,0.00001444105],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003061841,"about_ca_system_score_gemma":0.0001856064,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001631904,"about_ca_topic_score_gemma":0.00168716,"domain_scores_codex":[0.9973338,0.0001892782,0.0005168455,0.0008132439,0.0004011911,0.0007456616],"domain_scores_gemma":[0.9984739,0.0001210827,0.0002709438,0.0007788502,0.0001121154,0.0002430912],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006856544,0.0003193018,0.1582236,0.00004056489,0.00007721338,0.0007878412,0.000247658,0.0001046569,0.8063946,0.0003312053,0.03229239,0.0004952959],"study_design_scores_gemma":[0.001009733,0.0009476797,0.9230993,0.00008740457,0.00008672992,0.00006117916,0.0007997162,0.00001347824,0.03696543,0.0002030491,0.03604886,0.0006774355],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9904811,0.001731399,0.0001168931,0.000813334,0.0002229408,0.0006075423,0.001045864,0.00007479887,0.004906177],"genre_scores_gemma":[0.9908643,0.0005442373,0.0006759551,0.002619308,0.0008350609,0.00003579737,0.0004965104,0.00003493281,0.00389392],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7694292,"threshold_uncertainty_score":0.9999219,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0142639060840202,"score_gpt":0.212082338871083,"score_spread":0.1978184327870628,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}