{"id":"W1981788821","doi":"10.3354/dao02362","title":"Emergence of Viral hemorrhagic septicemia virus in the North American Great Lakes region is associated with low viral genetic diversity","year":2011,"lang":"en","type":"article","venue":"Diseases of Aquatic Organisms","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":62,"is_retracted":false,"has_abstract":true,"ca_institutions":"Fisheries and Oceans Canada","funders":"Cooperative State Research, Education, and Extension Service; U.S. Department of Agriculture","keywords":"Biology; Genetic diversity; Phylogenetic tree; Outbreak; Virus; Lineage (genetic); Range (aeronautics); Phylogenetics; Genetic variation; Zoology; Virology; Genetics; Gene; Population","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006254362,0.0002306241,0.0003785223,0.0001021058,0.0001363496,0.000006082823,0.0005274996,0.00006126356,0.0007211308],"category_scores_gemma":[0.00005521168,0.0001598852,0.000126472,0.0004302822,0.0006165909,0.00009128297,0.0001840119,0.0001188354,0.00006334294],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001886566,"about_ca_system_score_gemma":0.00004585693,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001127709,"about_ca_topic_score_gemma":0.001034261,"domain_scores_codex":[0.9988006,0.0001988628,0.0003109878,0.0002926007,0.00009910726,0.000297864],"domain_scores_gemma":[0.9990991,0.00005541766,0.0003735501,0.0003782549,0.00006040344,0.00003324451],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006956562,0.0013832,0.9668719,0.00009944613,0.0006073187,0.0001029193,0.01038215,0.000004177209,0.01473721,0.00009191683,0.003527204,0.001496933],"study_design_scores_gemma":[0.001383766,0.0006324294,0.9801064,0.00006017308,0.000927875,0.000005729512,0.003214943,0.00001217736,0.01322296,0.0001143545,0.00001685996,0.0003023161],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986176,0.0003963388,0.00009922818,0.00003716235,0.00005961501,0.0003572597,0.0001510242,0.00002744225,0.0002543297],"genre_scores_gemma":[0.9992208,0.00006109417,0.0000478,0.0002795442,0.000007278236,0.000006951376,0.0001705868,0.00001567102,0.0001902334],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01323454,"threshold_uncertainty_score":0.7895876,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01028303090957547,"score_gpt":0.1949628398550607,"score_spread":0.1846798089454852,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}