{"id":"W1981900444","doi":"10.1111/j.1399-3054.2009.01279.x","title":"The gymnosperm <i>Pinus pinea</i> contains both <i>AOX</i> gene subfamilies, <i>AOX1</i> and <i>AOX2</i>","year":2009,"lang":"en","type":"article","venue":"Physiologia Plantarum","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"","keywords":"Gymnosperm; Biology; Retrotransposon; Botany; Subfamily; Gene; Genome; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002452926,0.0003887976,0.0003225238,0.00002361152,0.0004589013,0.00008873603,0.0005128999,0.0002120445,0.000007915245],"category_scores_gemma":[0.00006170045,0.0002719842,0.0001194999,0.0001022631,0.0002031999,0.00001213878,0.0001876956,0.000210679,0.00001926651],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001819894,"about_ca_system_score_gemma":0.0001090496,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003364086,"about_ca_topic_score_gemma":0.00006103169,"domain_scores_codex":[0.9980802,0.00006010387,0.0003054587,0.0006507642,0.0001927815,0.0007106751],"domain_scores_gemma":[0.9989408,0.00004923393,0.0001458926,0.0006088855,0.00006894898,0.0001862131],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003457511,0.00007372704,0.00004809049,0.00001159379,0.00004299462,0.00001141591,0.00002936911,0.000008785029,0.9883178,0.0006709548,0.006986177,0.003453315],"study_design_scores_gemma":[0.0007780284,0.00114196,0.0006284284,0.0000152366,0.00003432403,0.0001303048,0.00009878708,0.00004573395,0.8789908,0.002050743,0.115658,0.0004276441],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9876786,0.003937394,0.0005780174,0.0012822,0.0005306983,0.0005803142,0.0004344815,0.0001144828,0.004863778],"genre_scores_gemma":[0.9835258,0.007901453,0.0001824975,0.006996906,0.0003510313,0.00003116129,0.0003090867,0.00002865883,0.0006733976],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1093271,"threshold_uncertainty_score":0.9999732,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004694135945808399,"score_gpt":0.2048201480646988,"score_spread":0.2001260121188904,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}