{"id":"W1981933547","doi":"10.1016/j.ympev.2014.06.018","title":"A time-calibrated, multi-locus phylogeny of piranhas and pacus (Characiformes: Serrasalmidae) and a comparison of species tree methods","year":2014,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Fish biology, ecology, and behavior","field":"Environmental Science","cited_by":68,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Toronto; Royal Ontario Museum; Royal Ottawa Mental Health Centre","funders":"George Washington University","keywords":"Characiformes; Biology; Evolutionary biology; Phylogenetics; Ecology; Zoology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002928247,0.0001643264,0.0003390521,0.00005196148,0.00007369409,0.000009511547,0.00008834423,0.0001706067,0.00004528312],"category_scores_gemma":[0.00004434219,0.0001459242,0.00004116079,0.0001168829,0.0008601174,0.00003013642,0.0001593144,0.00008000634,0.000003872883],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002002007,"about_ca_system_score_gemma":0.000006374028,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007796341,"about_ca_topic_score_gemma":0.0001864488,"domain_scores_codex":[0.9988852,0.0001989301,0.0003023748,0.0003041666,0.00009904242,0.0002103389],"domain_scores_gemma":[0.9995152,0.00004621659,0.0001611638,0.0001715743,0.00001867845,0.00008716706],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001848059,0.00009231656,0.2722244,0.00002024488,0.00001307524,4.602956e-7,0.0001322821,0.00006120439,0.7218043,0.00002777445,0.00002720353,0.005578279],"study_design_scores_gemma":[0.0005603028,0.0005053555,0.8844885,0.000008845591,0.00007021096,0.000008550148,0.0001040799,0.01795801,0.09565299,0.0002840354,0.0002074505,0.000151647],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9850908,0.0009849597,0.01337195,0.00003663327,0.00003742944,0.0001904796,0.0000117668,0.000009074519,0.0002669209],"genre_scores_gemma":[0.9860199,0.00008845913,0.01377391,0.00003002153,0.00001019491,0.000007508254,0.000007066312,0.00001160978,0.00005133431],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6261513,"threshold_uncertainty_score":0.5950616,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01961878675219092,"score_gpt":0.2780493235954102,"score_spread":0.2584305368432193,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}