{"id":"W1981960314","doi":"10.1371/journal.pone.0059427","title":"Genomic Comparison between Salmonella Gallinarum and Pullorum: Differential Pseudogene Formation under Common Host Restriction","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":45,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Specialized Research Fund for the Doctoral Program of Higher Education of China; Natural Science Foundation of Heilongjiang Province; National Natural Science Foundation of China; Harbin Medical University; National Institutes of Health; National Science Foundation","keywords":"Pseudogene; Biology; Host (biology); Serotype; Salmonella enteritidis; Salmonella; Genetics; Gene; Genome; Microbiology; Virulence; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001514704,0.0003355842,0.0002745536,0.001100888,0.0002147372,0.0003709967,0.0001833825,0.0003535924,0.0008679198],"category_scores_gemma":[0.0006200023,0.0001546492,0.000495255,0.0006867124,0.0002618119,0.0002510369,0.0004822,0.0002906684,0.0003070207],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001524611,"about_ca_system_score_gemma":0.000152351,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005248832,"about_ca_topic_score_gemma":0.000622229,"domain_scores_codex":[0.9998193,0.00002599478,0.00002011543,0.00006460331,0.00003302957,0.00003689832],"domain_scores_gemma":[0.9993524,0.0001752831,0.0002058803,0.0000691587,0.00009067137,0.0001066312],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004154666,0.00002849993,0.01286354,0.0001325259,0.00003420001,0.0001951674,0.0001990328,0.00006997553,0.9839818,0.00005081495,0.00001764003,0.002011324],"study_design_scores_gemma":[0.00002958185,0.001028594,0.7651416,0.00004219899,0.0002914366,0.002794161,0.0009925908,0.0008422101,0.224595,0.0002127916,0.00400149,0.00002838569],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979001,0.0002514327,0.0006606399,0.00001630757,0.000005277183,0.00001465803,0.0007971563,0.000011585,0.0003428896],"genre_scores_gemma":[0.9889782,0.0002999193,0.002448593,0.00006006979,0.000009934989,0.00004503239,0.007600246,0.00002326311,0.0005347788],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001100888,"threshold_uncertainty_score":0.002903521,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08400759428356872,"score_gpt":0.2385220785275277,"score_spread":0.1545144842439589,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}